genome.fa.s7729.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007729.1 Hibiscus syriacus cultivar Beakdansim tig00109980_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1111098

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 752 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836295--836355	32	1.9	32	96	0	113	34	21	16	27	1.95
844355--844412	12	4.8	12	79	8	64	15	15	17	51	1.76
850397--850436	20	2.1	20	90	9	66	17	22	10	50	1.76
850406--850443	20	1.9	20	88	0	58	21	26	10	42	1.85
856652--856689	20	1.9	20	84	10	51	44	5	13	36	1.66
858648--858688	21	2.0	21	85	9	57	48	4	0	46	1.23
859188--859227	10	3.8	10	84	12	53	67	0	0	32	0.91
868971--869011	18	2.3	18	87	4	57	29	7	2	60	1.36
870689--870724	18	2.0	18	88	0	54	27	27	19	25	1.99
879385--879443	23	2.9	19	85	12	66	22	33	27	16	1.95
879426--879463	20	1.9	20	88	0	58	26	36	26	10	1.89
896372--896425	23	2.5	20	75	18	54	42	18	1	37	1.61
896387--896449	23	2.7	23	90	0	90	38	19	6	36	1.77
896799--896852	23	2.5	20	75	18	54	42	18	1	37	1.61
896814--896876	23	2.7	23	90	0	90	38	19	6	36	1.77
899430--900283	184	4.7	184	98	0	1622	33	15	14	35	1.89
899430--900283	366	2.3	368	97	0	1622	33	15	14	35	1.89
901651--901737	3	29.0	3	77	0	84	24	34	5	35	1.79
901651--901752	18	5.7	18	79	0	87	22	34	6	36	1.81
901659--901749	42	2.2	42	91	0	146	21	35	7	35	1.83
903214--904251	199	5.1	199	91	6	1669	31	15	15	37	1.88
903733--903787	21	2.6	21	100	0	110	27	16	16	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
903534--904183	220	3.1	220	90	6	997	31	14	15	38	1.88
904332--904376	19	2.4	19	92	0	72	57	8	2	31	1.41
906166--906231	33	2.0	33	87	0	96	24	45	1	28	1.62
908508--908554	20	2.4	19	79	10	58	19	17	8	55	1.67
908675--908722	21	2.3	20	89	6	78	16	16	10	56	1.67
918165--918233	23	3.0	23	84	0	102	33	26	24	15	1.95
918612--919363	374	2.0	374	100	0	1504	37	17	3	41	1.66
919795--919935	64	2.2	65	89	1	212	23	20	20	35	1.96
919819--919954	64	2.1	63	89	4	202	22	21	22	33	1.97
925508--925617	24	4.6	24	72	4	87	24	10	15	49	1.77
925509--925615	48	2.2	48	81	3	117	24	10	15	49	1.76
927924--927972	23	2.2	21	82	13	55	32	18	16	32	1.93
927932--927977	23	2.0	23	91	0	74	28	19	17	34	1.94
934357--934397	18	2.3	19	87	8	59	46	14	2	36	1.58
941052--941134	37	2.3	36	86	8	116	31	4	20	43	1.73
941516--941540	12	2.1	12	100	0	50	28	16	16	40	1.89
945639--945721	37	2.3	36	86	8	116	31	4	20	43	1.73
946104--946128	12	2.1	12	100	0	50	28	16	16	40	1.89
950228--950310	37	2.3	36	86	8	116	31	4	20	43	1.73
954202--954254	21	2.4	22	84	6	72	28	0	1	69	0.99
958547--958595	3	16.7	3	78	4	55	63	2	2	32	1.17
958849--959212	136	2.6	138	85	3	466	26	20	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
959132--959581	123	3.7	123	91	2	701	26	19	14	40	1.90
959384--959429	24	2.0	22	87	8	65	15	23	6	54	1.64
959408--959437	15	1.9	16	93	6	53	20	20	10	50	1.76
966520--966572	17	2.9	18	78	13	56	60	0	13	26	1.33
977181--977253	35	2.2	33	85	9	94	41	2	1	54	1.23
977180--977249	19	3.5	20	75	11	72	41	2	1	54	1.24
977193--977251	16	3.5	16	75	18	57	42	1	1	54	1.20
980889--981050	57	2.9	57	87	1	229	15	19	29	35	1.93
985498--985543	24	1.9	24	100	0	92	28	17	13	41	1.86
992141--992173	2	17.0	2	93	6	59	48	0	0	51	1.00
992286--992529	9	30.2	8	67	24	58	18	6	1	74	1.11
992296--992362	18	3.7	18	75	18	68	20	1	1	76	0.95
992287--992442	30	5.0	31	72	16	101	17	5	1	75	1.09
992330--992466	6	22.8	6	71	18	67	16	5	1	76	1.03
992330--992433	36	3.0	34	83	9	129	15	4	1	77	1.02
992338--992486	35	4.4	34	78	15	134	16	6	1	75	1.06
992450--992531	29	2.8	29	77	15	87	14	9	1	74	1.13
992410--992510	40	2.5	40	81	13	111	17	6	1	73	1.15
992864--992917	3	18.0	3	92	7	92	33	0	0	66	0.92
994035--994065	15	2.1	15	93	0	53	54	0	0	45	0.99
997476--997501	2	13.0	2	100	0	52	50	0	0	50	1.00
1002262--1002323	24	2.6	24	84	0	79	61	17	9	11	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1002527--1002609	24	3.5	24	83	0	103	60	10	9	19	1.57
1002568--1002601	14	2.4	14	95	0	59	64	11	5	17	1.45
1007087--1007123	19	1.9	19	94	0	65	32	29	16	21	1.95
1007200--1007288	20	4.4	20	81	8	117	29	29	17	23	1.97
1008109--1008162	24	2.2	24	93	0	90	20	18	20	40	1.91
1010397--1010431	18	1.9	18	88	0	52	54	22	2	20	1.58
1010489--1010771	140	2.0	140	97	0	530	27	13	15	43	1.84
1010742--1010836	20	4.8	20	90	0	145	31	18	20	29	1.96
1010877--1010920	20	2.2	20	91	0	70	13	15	22	47	1.81
1010888--1010934	20	2.3	20	81	0	58	17	14	25	42	1.87
1011044--1011098	13	4.0	13	73	13	56	58	14	1	25	1.47
1013727--1013777	3	16.3	3	84	8	57	60	1	0	37	1.08
1013933--1014467	76	7.0	76	96	0	937	34	21	21	22	1.97
1015152--1015206	22	2.5	22	87	0	83	40	12	12	34	1.82
1015566--1015721	54	2.9	54	85	0	222	23	21	16	39	1.92
1017713--1017932	114	1.9	114	85	0	305	32	18	14	34	1.91
1027113--1027184	3	23.3	3	77	5	63	56	1	0	41	1.07
1028102--1028224	42	2.9	42	78	7	133	23	17	36	21	1.95
1028102--1028216	21	5.5	21	72	4	79	22	18	36	22	1.95
1028700--1028743	20	2.2	20	95	0	79	50	22	13	13	1.77
1028730--1028797	20	3.4	20	85	4	93	36	25	19	19	1.94
1028803--1028860	19	3.0	19	82	2	71	50	22	15	12	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028899--1028946	20	2.4	20	92	0	78	18	18	27	35	1.95
1028899--1028965	20	3.3	20	81	4	64	17	16	26	38	1.91
1030661--1030725	25	2.6	25	97	0	121	50	20	12	16	1.77
1030873--1030978	20	5.4	20	82	6	101	45	23	16	14	1.84
1031362--1031426	22	3.0	21	82	4	60	21	16	43	18	1.88
1031369--1031426	22	2.6	22	86	0	89	18	18	43	18	1.89
1031564--1031608	20	2.2	20	84	0	54	33	22	24	20	1.97
1031576--1031679	20	5.1	20	85	6	104	24	16	25	33	1.96
1031605--1031659	21	2.6	21	97	0	101	18	14	25	41	1.88
1031695--1031735	21	2.0	21	85	0	55	36	19	19	24	1.95
1033006--1033137	34	3.7	34	68	23	110	34	21	18	25	1.96
1032980--1033116	73	1.9	73	98	0	265	37	16	22	24	1.93
1035828--1035869	22	2.0	22	86	13	61	30	2	0	66	1.04
1037357--1037477	59	2.1	58	81	7	138	40	16	9	33	1.82
1039065--1039096	17	1.9	16	93	6	55	50	0	0	50	1.00
1050484--1050518	15	2.3	15	95	0	61	28	0	5	65	1.15
1050758--1050816	2	29.5	2	100	0	118	50	0	0	49	1.00
1051457--1051516	31	1.9	32	83	10	79	46	15	8	30	1.74
1054650--1054709	30	2.0	30	100	0	120	23	10	23	43	1.83
1054883--1054961	32	2.5	32	82	0	95	37	17	16	27	1.91
1055692--1055728	15	2.5	16	87	12	53	27	0	10	62	1.28
1056416--1056459	22	2.0	22	81	0	52	40	0	4	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1056381--1056451	31	2.2	31	82	7	79	40	1	4	53	1.29
1057451--1057527	28	2.7	27	78	13	84	62	3	0	33	1.14
1058120--1058300	43	4.2	44	79	14	148	27	20	4	48	1.69
1058378--1058414	3	12.3	3	100	0	74	32	0	0	67	0.91
1065168--1065213	21	2.2	21	84	0	56	23	21	8	45	1.80
1070940--1072339	231	6.0	231	96	1	2509	45	13	15	25	1.83
1072108--1072137	11	2.7	11	100	0	60	73	6	10	10	1.25
1073500--1073614	60	1.9	60	86	10	164	35	10	13	40	1.80
1076898--1077130	129	1.8	129	84	0	322	33	20	13	32	1.92
1079008--1079056	20	2.5	20	86	3	64	30	10	4	55	1.52

Tables:   1   2   3   4   5   6   7