genome.fa.s7729.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007729.1 Hibiscus syriacus cultivar Beakdansim tig00109980_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1111098

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 752 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456764--456813	23	2.2	23	96	0	91	14	66	2	18	1.35
457492--457540	3	16.7	3	87	12	75	67	0	0	32	0.91
457866--458356	113	4.3	113	94	0	811	30	18	14	37	1.90
458263--458426	73	2.2	73	100	0	328	30	18	18	32	1.95
458390--458836	123	3.7	123	80	7	449	26	20	14	38	1.92
458885--459134	73	3.4	73	90	2	356	30	21	22	26	1.99
459801--459858	22	2.6	22	94	0	98	36	15	17	31	1.91
460227--460381	55	2.9	54	78	1	157	28	22	14	34	1.94
467264--467298	16	2.2	16	100	0	70	22	34	11	31	1.90
470345--470386	20	2.2	19	86	4	57	64	2	0	33	1.07
470258--470490	120	2.0	120	85	5	321	45	8	8	37	1.66
471983--472025	3	14.7	3	80	4	52	62	0	2	34	1.08
472799--472840	19	2.1	21	86	8	61	33	0	9	57	1.31
480010--480052	18	2.4	18	96	0	77	53	11	11	23	1.69
480190--480248	30	2.0	30	100	0	118	33	16	18	30	1.94
481621--481676	28	2.0	29	85	3	78	30	23	3	42	1.71
482327--482366	20	2.0	20	90	0	62	5	17	5	72	1.21
487242--487290	25	2.0	25	87	0	71	32	16	8	42	1.77
489018--489045	13	2.2	13	100	0	56	53	7	0	39	1.28
489056--489123	27	2.5	27	92	0	109	44	17	10	27	1.81
489487--489534	18	2.7	18	75	9	53	50	2	2	45	1.25
489554--489619	27	2.4	27	89	5	96	42	7	1	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489495--489638	66	2.2	66	81	5	166	45	5	3	45	1.43
495705--495762	28	2.2	26	84	6	71	58	1	6	32	1.35
496224--496282	31	2.0	29	83	12	75	50	0	1	47	1.11
496338--496379	20	2.2	19	86	4	57	64	2	0	33	1.07
496237--496490	120	2.1	122	81	7	304	46	7	8	38	1.62
497980--498019	3	13.7	3	84	5	55	62	0	0	37	0.95
497967--498019	21	2.4	21	84	9	61	58	0	0	41	0.98
498794--498835	19	2.1	21	86	8	61	33	0	9	57	1.31
505981--506023	18	2.4	18	96	0	77	53	11	11	23	1.69
506162--506220	30	2.0	30	100	0	118	33	16	18	30	1.94
508296--508335	20	2.0	20	90	0	62	5	17	5	72	1.21
513216--513264	25	2.0	25	87	0	71	32	16	8	42	1.77
514728--514768	14	2.9	15	75	14	50	63	9	4	21	1.44
515410--515457	18	2.7	18	75	9	53	50	2	2	45	1.25
516842--516868	13	2.1	13	100	0	54	44	7	7	40	1.60
525179--525203	13	1.9	13	100	0	50	48	8	0	44	1.32
528369--528404	2	18.0	2	100	0	72	50	0	0	50	1.00
530116--531612	739	2.0	747	94	3	2651	29	15	20	34	1.94
533095--533153	8	7.2	8	81	11	57	44	22	8	25	1.81
533095--533142	4	11.5	4	86	8	69	47	22	4	25	1.69
544262--544299	2	19.5	2	94	5	69	50	0	0	50	1.00
544265--544298	17	2.0	17	100	0	68	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544954--545440	131	3.7	131	85	5	657	33	9	17	39	1.82
544954--545439	260	1.9	258	87	4	724	33	9	17	39	1.82
553113--553177	3	21.7	3	90	6	105	67	0	0	32	0.91
553216--553255	21	1.9	21	94	0	71	47	7	0	45	1.31
553297--553326	14	2.1	14	93	0	51	46	13	3	36	1.60
553262--553391	38	3.4	38	84	8	151	44	9	3	43	1.51
553349--553391	22	2.0	22	90	0	68	44	9	0	46	1.35
555060--555112	19	2.8	19	88	0	70	47	22	16	13	1.82
555102--555214	20	6.1	19	73	13	92	13	23	20	43	1.86
555124--555189	33	2.0	34	93	3	116	12	24	24	39	1.89
555102--555214	19	6.1	19	73	13	92	13	23	20	43	1.86
558782--558817	14	2.6	14	90	0	54	30	2	22	44	1.67
558942--558998	14	3.7	14	75	20	60	43	22	24	8	1.81
558927--559013	33	2.6	33	94	0	147	43	20	22	12	1.86
558927--558984	19	3.3	19	72	22	63	44	20	24	10	1.82
558998--559058	19	3.2	19	76	0	77	26	18	21	34	1.96
558998--559110	38	3.1	38	90	7	173	20	20	19	39	1.92
559009--559111	19	5.7	19	74	11	108	16	21	19	42	1.89
559010--559111	33	2.9	34	89	7	143	16	21	19	42	1.89
561403--561427	12	2.1	12	100	0	50	0	28	0	72	0.86
562440--562491	21	2.5	21	87	3	70	38	17	23	21	1.93
562480--562558	20	3.9	20	77	9	70	35	22	18	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562500--562568	21	3.3	21	76	8	70	40	21	17	20	1.91
562791--562835	20	2.2	20	96	0	81	37	17	20	24	1.93
562782--562869	20	4.4	20	75	5	79	39	21	19	19	1.92
564976--565108	20	7.5	18	70	23	86	42	22	21	13	1.87
565035--565124	14	5.8	14	71	21	72	46	23	18	11	1.81
565018--565140	33	3.8	33	91	2	194	45	24	18	11	1.82
565018--565140	65	1.9	66	91	5	205	45	24	18	11	1.82
565136--565265	19	7.6	19	70	26	121	13	20	20	46	1.83
565160--565249	14	5.7	14	69	23	63	11	17	22	48	1.78
565141--565265	33	3.8	33	97	0	241	12	19	20	47	1.82
565250--565304	20	2.8	19	83	8	65	16	23	23	36	1.94
565793--565832	18	2.2	18	95	0	71	12	15	45	27	1.82
567151--567224	20	3.8	20	81	1	69	43	22	17	16	1.88
567458--567501	22	2.0	22	100	0	88	18	13	45	22	1.84
567669--567803	20	6.7	20	80	7	121	24	17	24	33	1.96
567669--567806	61	2.3	61	85	0	195	23	17	23	34	1.96
567669--567824	61	2.6	61	82	2	161	23	19	23	33	1.97
570421--570459	12	3.4	12	82	13	55	25	43	23	7	1.80
578378--578408	16	1.9	16	93	0	53	0	41	0	58	0.98
582905--582929	12	2.1	12	100	0	50	60	0	0	40	0.97
583098--583140	13	3.3	13	93	0	68	37	18	18	25	1.94
584987--585068	21	3.9	21	87	3	119	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
586274--586328	16	3.2	17	76	19	53	76	3	3	16	1.07
588185--588591	206	2.0	206	89	0	627	32	15	24	27	1.96
590810--590924	7	15.1	7	72	16	79	1	19	2	76	0.99
590798--590861	22	3.0	22	86	8	80	1	18	1	78	0.92
593107--593278	87	2.0	87	92	0	290	28	24	16	30	1.96
594734--594793	26	2.3	27	80	8	70	75	5	3	16	1.12
594776--594805	11	2.7	11	89	0	51	76	6	0	16	0.99
598923--599016	16	5.5	16	72	18	55	47	26	9	15	1.76
599730--599828	32	3.1	32	80	9	114	35	27	14	23	1.93
601116--601161	16	2.9	16	78	18	51	50	4	0	45	1.21
601158--601200	14	3.0	15	83	6	54	46	0	0	53	1.00
602484--602538	19	2.9	19	79	15	60	23	7	1	67	1.26
604146--604407	103	2.5	103	83	4	332	44	8	9	37	1.67
606224--606257	18	1.9	17	88	5	50	64	0	2	32	1.08
607151--607351	65	3.1	64	80	10	221	30	23	17	27	1.97
613141--613198	23	2.6	22	83	5	64	29	27	22	20	1.99
613150--613198	23	2.1	23	88	0	71	30	28	22	18	1.97
615843--616043	65	3.1	62	79	14	201	31	24	18	25	1.98
615884--616043	65	2.5	63	86	6	214	30	23	18	26	1.98
616015--616063	19	2.6	19	84	9	57	24	28	20	26	1.99
617154--617190	2	18.5	2	100	0	74	51	0	0	48	1.00
624257--624319	27	2.3	27	100	0	126	39	19	17	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628023--628116	8	11.5	8	93	4	152	12	9	37	40	1.76
629743--629780	16	2.4	16	100	0	76	34	26	21	18	1.96
629804--629836	17	2.0	17	88	5	50	30	9	27	33	1.88
635861--635894	16	2.1	17	88	5	52	35	0	0	64	0.94
637053--637140	27	3.3	27	100	0	176	42	0	22	35	1.54
639697--639822	59	2.1	61	86	8	197	52	6	0	41	1.27
639736--639822	17	4.6	17	67	25	50	56	5	0	37	1.23
640699--640742	17	2.5	17	85	3	52	59	2	0	38	1.10
641833--641899	31	2.2	31	86	0	98	44	8	20	25	1.80
642736--642767	15	2.0	17	88	11	50	31	15	6	46	1.71

Tables:   1   2   3   4   5   6   7