genome.fa.s7733.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007733.1 Hibiscus syriacus cultivar Beakdansim tig00109987_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1979160

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 996 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575132--575186	22	2.3	24	82	17	71	47	3	3	45	1.38
581044--582045	498	2.0	500	99	0	1981	40	17	20	21	1.91
582382--582590	83	2.5	82	84	3	276	30	19	16	33	1.94
582386--582622	83	2.8	82	81	7	255	29	19	16	34	1.94
585366--585407	15	2.7	15	88	7	57	64	0	2	33	1.07
592974--593156	67	2.7	67	82	1	215	26	17	14	41	1.88
594822--594853	16	2.0	16	100	0	64	37	37	6	18	1.76
596015--596083	31	2.2	31	82	10	79	40	10	8	40	1.70
607517--607562	21	2.2	21	84	7	58	54	19	4	21	1.61
607529--607554	12	2.2	12	100	0	52	61	15	0	23	1.33
613165--613237	32	2.3	32	83	4	94	38	10	8	42	1.70
638201--638361	73	2.2	74	92	1	261	31	25	18	24	1.98
644011--644065	21	2.6	21	100	0	110	34	30	14	20	1.92
644011--644079	21	3.4	19	90	9	77	33	28	15	21	1.95
649080--649136	20	2.6	22	76	21	57	45	0	3	50	1.18
649757--649804	24	2.0	23	84	4	60	27	6	16	50	1.69
649765--649831	34	1.9	35	84	3	91	26	5	14	52	1.65
650065--650138	38	1.9	38	86	0	103	43	13	14	28	1.84
650482--650525	13	3.5	13	87	6	63	20	52	13	13	1.74
650561--650621	24	2.5	26	77	17	69	55	0	0	44	0.99
650579--650618	19	2.1	19	85	0	53	55	0	0	45	0.99
650639--650682	12	3.8	12	93	3	72	31	45	9	13	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653241--653516	134	2.1	133	96	0	507	39	10	13	36	1.78
668497--668615	55	2.2	55	95	0	211	46	8	9	36	1.66
668502--668586	27	3.1	27	69	21	86	44	8	8	38	1.64
668508--668606	28	3.6	29	72	20	104	46	5	7	41	1.53
674304--674616	156	2.0	156	99	0	617	36	20	15	27	1.93
677134--677284	75	2.0	76	98	1	295	56	3	27	11	1.53
677675--677762	36	2.5	36	88	1	124	25	15	19	39	1.91
683691--683742	21	2.5	20	85	14	70	25	0	3	71	1.03
683681--683742	21	3.0	22	77	17	69	25	0	3	70	1.02
684406--684439	2	17.0	2	100	0	68	50	0	0	50	1.00
684639--684684	18	2.7	17	86	6	58	36	4	30	28	1.76
685430--685491	33	1.9	33	93	3	108	43	35	6	14	1.71
685221--685720	248	2.0	244	88	6	751	37	27	12	22	1.90
686341--686376	12	3.1	11	88	11	54	2	27	0	69	1.02
687391--687533	51	2.8	51	98	0	277	20	3	21	53	1.60
688215--688266	21	2.5	21	81	3	61	38	19	25	17	1.93
688297--688349	20	2.7	20	87	0	79	24	26	20	28	1.99
688886--688927	19	2.2	19	86	0	57	52	23	16	7	1.68
688923--689089	20	9.1	19	72	17	120	11	21	22	44	1.85
688977--689064	33	2.6	33	90	1	131	11	23	25	39	1.88
691087--691153	21	3.2	21	66	6	55	23	35	19	20	1.95
691065--691153	42	2.1	42	81	8	101	23	35	19	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692659--692789	19	7.7	19	66	23	94	14	22	19	42	1.88
692663--692789	33	3.9	32	87	8	193	14	22	19	42	1.88
692656--692788	66	2.0	66	97	0	248	16	22	19	41	1.90
695054--695078	12	2.1	12	100	0	50	0	28	0	72	0.86
696363--696420	20	2.9	20	94	0	98	37	22	22	17	1.93
696444--696497	14	3.5	14	75	22	54	11	18	20	50	1.77
696426--696496	33	2.2	33	81	0	79	19	18	21	40	1.91
696439--696488	19	2.9	18	78	21	63	12	20	18	50	1.78
696439--696516	33	2.4	33	88	0	111	12	21	21	43	1.86
696604--696640	14	2.6	14	86	0	56	48	21	0	29	1.50
698508--698575	20	3.5	20	78	9	77	39	23	22	14	1.91
698564--698621	14	3.9	14	79	16	71	48	25	17	8	1.75
698548--698626	32	2.4	33	95	2	142	46	24	18	10	1.80
698633--698714	18	4.6	19	76	14	86	13	19	19	47	1.82
698708--698753	20	2.3	20	88	0	65	15	21	26	36	1.93
699229--699273	18	2.5	18	88	0	72	13	15	44	26	1.83
700592--700645	20	2.8	20	80	2	65	48	22	16	12	1.80
700879--700922	22	2.0	22	100	0	88	18	13	45	22	1.84
701110--701204	20	4.7	20	78	7	84	24	17	25	32	1.97
701131--701225	41	2.3	41	80	3	102	21	20	23	35	1.96
701672--701709	16	2.4	16	90	0	58	5	10	39	44	1.61
703036--703098	28	2.3	27	81	5	74	39	4	7	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703059--703106	25	2.0	23	84	11	62	45	2	6	45	1.40
703423--703468	24	1.9	24	86	8	67	52	2	2	43	1.25
703420--703472	24	2.3	23	79	17	65	52	1	1	43	1.23
703617--703695	22	3.8	20	73	20	74	55	0	1	43	1.07
703625--703662	14	2.7	14	80	12	51	65	0	0	34	0.93
703733--703838	43	2.4	42	83	12	115	48	1	0	50	1.12
703787--703861	35	2.2	32	81	13	87	50	2	0	46	1.15
707192--707221	2	15.0	2	100	0	60	50	0	0	50	1.00
708331--708371	17	2.4	17	95	0	73	21	12	21	43	1.85
710031--710076	20	2.4	18	82	13	56	39	0	2	58	1.10
711919--711948	2	15.0	2	100	0	60	50	0	0	50	1.00
723882--724976	548	2.0	547	94	1	1917	30	17	19	32	1.95
727164--727255	30	3.2	29	81	7	107	39	6	9	44	1.63
727754--727822	29	2.3	30	82	7	88	26	2	4	66	1.24
727901--727967	31	2.2	31	83	5	82	46	4	1	47	1.31
732807--732850	22	2.0	22	82	4	54	31	0	15	52	1.44
732916--733073	60	2.6	60	82	2	192	32	18	5	43	1.74
734191--734222	14	2.3	14	94	0	55	59	9	3	28	1.44
749526--749662	42	3.3	42	88	5	183	2	22	34	40	1.69
759786--759817	16	2.0	16	93	0	55	21	18	3	56	1.56
761456--761521	4	16.5	4	83	0	87	27	4	22	45	1.72
763011--763035	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
763060--763139	17	4.5	17	76	15	74	53	1	0	45	1.08
763056--763128	37	1.9	39	86	10	107	54	0	0	45	0.99
763061--763128	17	3.8	17	81	16	75	57	0	0	42	0.98
763153--763193	15	2.7	15	100	0	82	58	0	0	41	0.98
763734--763781	3	16.0	3	100	0	96	33	0	0	66	0.92
763824--763942	3	40.0	3	98	1	231	32	0	0	67	0.91
766516--766551	13	2.6	14	95	4	65	44	22	19	13	1.86
770886--770930	22	2.0	22	100	0	90	42	26	13	17	1.86
772848--772895	20	2.4	20	100	0	96	27	10	4	58	1.49
773569--773612	21	2.1	21	100	0	88	18	18	27	36	1.94
775654--775698	21	2.1	21	83	0	54	48	6	17	26	1.72
775663--775709	20	2.3	21	85	3	60	38	8	19	34	1.82
777235--777395	40	4.0	40	96	0	304	21	24	14	40	1.90
779291--779441	60	2.5	59	80	10	162	35	19	4	39	1.73
779538--779681	60	2.4	60	78	9	150	37	4	25	31	1.77
781101--781131	2	15.5	2	100	0	62	51	0	0	48	1.00
781317--781369	20	2.7	20	93	0	88	30	15	3	50	1.61
781384--781696	159	2.0	159	100	0	626	33	19	16	30	1.94
782531--782715	92	2.0	92	100	0	370	19	21	32	27	1.97
789772--789796	6	4.2	6	100	0	50	64	20	0	16	1.30
800313--800337	9	2.8	9	100	0	50	60	12	20	8	1.57
800442--800510	29	2.3	29	82	7	77	44	4	7	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
800596--800685	30	3.1	29	83	3	101	40	11	10	38	1.74
800596--800698	30	3.5	29	80	5	82	38	11	10	38	1.77
806040--806177	60	2.3	60	80	1	159	37	15	12	34	1.85
806981--807091	39	2.8	39	83	12	156	34	18	0	45	1.56
813886--814203	167	1.9	167	94	0	564	25	16	23	34	1.95
819717--819764	14	3.2	14	75	13	51	45	6	2	45	1.40
830058--830102	22	2.0	22	86	0	63	53	17	8	20	1.70
833277--833308	3	10.7	3	100	0	64	31	0	0	68	0.90
834223--834268	11	4.0	12	75	11	51	45	0	0	54	0.99
837290--837328	21	1.9	20	85	15	53	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9