genome.fa.s7733.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007733.1 Hibiscus syriacus cultivar Beakdansim tig00109987_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1979160

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 996 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1745060--1745333	19	15.4	19	81	15	354	13	21	17	46	1.83
1745038--1745305	52	5.0	52	93	4	455	14	22	16	46	1.83
1745038--1745305	109	2.5	105	91	6	459	14	22	16	46	1.83
1748529--1748918	20	19.5	20	84	5	457	20	18	25	35	1.95
1749532--1749564	6	5.5	6	100	0	66	15	0	84	0	0.61
1752803--1752842	19	2.0	20	90	4	64	27	2	0	70	1.01
1756404--1756441	17	2.2	17	90	0	58	23	36	26	13	1.91
1756479--1756521	15	2.8	16	92	7	79	25	34	25	13	1.93
1757239--1757280	18	2.4	17	81	14	50	78	0	7	14	0.95
1767790--1767850	30	2.0	30	100	0	122	19	26	31	22	1.98
1773142--1773168	4	6.8	4	100	0	54	0	25	0	74	0.83
1773430--1773505	19	4.2	19	78	11	88	67	2	0	30	1.05
1773456--1773508	9	6.0	9	74	12	56	71	1	0	26	0.96
1773460--1773510	8	6.0	8	75	20	50	70	1	0	27	0.98
1773438--1773509	35	2.1	35	100	0	144	68	2	0	29	1.04
1774729--1774813	29	2.9	29	92	0	143	12	35	30	21	1.91
1774817--1774910	33	2.8	32	82	6	107	9	39	25	25	1.86
1774868--1774925	20	2.8	20	84	7	53	13	31	31	24	1.94
1774888--1774925	20	1.9	20	94	0	67	13	28	34	23	1.92
1774964--1775021	29	2.0	29	89	0	89	22	27	36	13	1.92
1775010--1775052	22	2.0	22	100	0	86	32	39	18	9	1.83
1779880--1779956	31	2.5	31	93	0	127	49	12	10	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1780789--1780945	86	1.8	85	93	1	269	43	14	14	27	1.84
1781848--1781909	31	2.0	32	87	9	92	32	8	9	50	1.65
1782097--1782179	39	2.1	39	95	0	148	49	16	6	27	1.69
1782209--1782252	12	3.6	12	79	14	54	22	25	2	50	1.61
1784797--1784863	30	2.2	30	81	5	73	32	16	7	43	1.76
1786652--1786687	12	3.0	12	100	0	72	33	16	0	50	1.46
1786724--1786775	3	17.3	3	100	0	104	32	0	0	67	0.91
1786814--1786849	14	2.6	14	91	4	56	44	27	0	27	1.55
1787870--1787905	10	3.5	10	92	3	54	33	5	0	61	1.19
1789806--1789843	2	19.0	2	100	0	76	50	0	0	50	1.00
1807927--1807964	20	1.9	19	94	5	67	31	21	28	18	1.97
1808642--1808682	19	2.2	19	100	0	82	26	12	26	34	1.92
1809743--1809792	26	2.0	25	88	4	73	26	16	8	50	1.72
1816836--1816916	40	2.1	37	86	6	108	49	9	17	23	1.76
1828544--1828585	2	21.0	2	100	0	84	50	0	0	50	1.00
1831345--1831513	61	2.8	60	74	12	137	43	4	18	33	1.71
1843718--1843997	156	1.8	149	81	9	339	51	6	13	29	1.65
1844815--1845211	55	7.2	55	85	4	392	27	16	24	30	1.97
1844830--1845211	165	2.3	164	83	5	450	27	16	25	30	1.97
1848935--1849023	45	1.9	47	93	4	155	28	11	23	37	1.89
1851697--1851895	75	2.6	77	88	4	289	19	24	33	23	1.97
1852511--1852554	17	2.6	17	85	7	63	56	29	0	13	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1852506--1852556	9	6.2	8	78	17	52	58	27	0	13	1.36
1854489--1854528	21	1.9	21	89	0	62	10	25	40	25	1.86
1860333--1860542	76	2.8	77	88	2	300	20	23	32	24	1.98
1868369--1868452	10	8.6	10	71	22	54	72	0	20	7	1.07
1868461--1868523	7	8.7	7	87	6	90	76	0	14	9	1.02
1868460--1868523	21	2.9	22	88	6	103	76	0	14	9	1.01
1868425--1868523	44	2.1	48	85	12	134	71	0	17	11	1.13
1868460--1868537	14	5.3	14	82	8	75	76	0	14	8	1.00
1869814--1870193	55	6.9	55	87	4	403	27	16	25	30	1.96
1869815--1870201	165	2.3	165	83	5	460	27	16	25	30	1.97
1869987--1870224	110	2.2	110	83	3	300	27	18	25	28	1.98
1873551--1873681	2	66.0	2	98	1	255	50	49	0	0	1.00
1874878--1874931	26	2.0	27	89	3	83	46	25	1	25	1.63
1875104--1875176	36	2.0	36	81	5	85	50	4	2	42	1.35
1881395--1881434	21	1.9	21	84	0	53	27	37	25	10	1.88
1885072--1885107	17	2.1	17	94	0	63	36	19	16	27	1.93
1885658--1885734	3	24.3	3	81	12	75	1	35	0	63	1.03
1886843--1886880	3	12.3	3	94	5	67	68	0	31	0	0.90
1886725--1887021	155	1.9	155	99	0	585	44	4	25	24	1.73
1886998--1887023	13	2.0	13	100	0	52	61	0	38	0	0.96
1887020--1887131	3	37.3	3	100	0	224	33	0	66	0	0.92
1892578--1892609	3	10.7	3	93	0	55	34	3	0	62	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1893775--1893821	20	2.4	19	80	16	51	25	2	14	57	1.49
1898451--1898529	16	5.1	14	78	21	79	78	11	10	0	0.97
1898471--1898515	19	2.3	19	85	11	56	80	13	6	0	0.91
1899559--1899623	4	17.2	4	76	17	68	50	24	0	24	1.49
1899557--1899622	28	2.4	28	89	5	98	51	24	0	24	1.48
1900063--1900362	103	2.9	102	85	8	378	32	17	10	40	1.83
1900077--1900406	103	3.2	102	80	7	364	30	17	10	40	1.84
1900354--1900424	35	2.0	36	86	10	101	33	16	11	38	1.85
1900338--1900474	36	3.8	36	76	8	118	35	16	11	35	1.86
1900702--1900826	32	3.9	31	70	14	92	28	16	12	41	1.86
1900923--1901062	64	2.2	65	84	3	176	32	8	13	45	1.74
1901283--1901375	28	3.0	31	79	17	97	22	16	15	46	1.84
1901397--1901601	43	4.7	43	70	14	159	24	35	19	20	1.96
1901496--1901572	40	1.9	40	86	0	109	22	37	16	23	1.94
1901401--1901703	133	2.3	133	93	0	516	24	35	18	22	1.96
1901902--1901948	3	16.0	3	86	4	69	31	2	2	63	1.18
1903115--1903161	20	2.4	19	80	16	51	27	0	14	57	1.38
1904212--1904279	34	2.0	34	100	0	136	29	11	11	47	1.76
1906969--1907055	43	2.0	43	95	0	156	43	21	16	18	1.87
1910580--1910991	153	2.7	153	87	2	572	17	27	11	42	1.84
1918693--1918770	9	9.2	8	73	18	52	60	0	0	39	0.97
1918681--1918764	34	2.5	34	96	1	152	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1921684--1921837	36	4.4	36	80	12	169	38	21	12	26	1.90
1921747--1921797	15	3.2	15	70	24	50	35	25	15	23	1.94
1921684--1921855	36	4.9	34	80	11	161	40	22	12	25	1.88
1926185--1926227	21	2.0	21	81	0	50	30	30	25	13	1.94
1926254--1926291	20	1.9	20	88	0	58	23	34	31	10	1.89
1926766--1927081	150	2.1	150	94	1	555	26	17	21	34	1.95
1927049--1927093	23	2.0	23	86	0	63	20	26	26	26	1.99
1935116--1935170	6	9.2	6	95	0	101	1	16	47	34	1.57
1935408--1935462	22	2.5	22	75	0	56	29	9	23	38	1.85
1940749--1940792	21	2.1	21	86	0	61	29	27	27	15	1.96
1941836--1941943	31	3.5	31	78	3	94	25	18	21	35	1.96
1941889--1941984	30	3.2	30	83	2	104	17	19	28	34	1.95
1945425--1945450	5	5.2	5	100	0	52	0	19	57	23	1.40
1946268--1946311	21	2.1	21	83	8	54	29	25	27	18	1.98
1947355--1947462	31	3.5	31	79	3	94	23	18	23	35	1.96
1947408--1947503	30	3.2	30	83	2	104	17	19	28	34	1.95
1949252--1949305	5	10.8	5	87	0	63	5	38	37	18	1.74
1949303--1949339	6	6.2	6	93	0	65	2	16	48	32	1.60
1949614--1949668	22	2.5	22	75	0	56	29	9	23	38	1.85
1950688--1950750	2	31.5	2	100	0	126	49	0	0	50	1.00
1951310--1951349	2	20.0	2	100	0	80	50	0	0	50	1.00
1951653--1951739	39	2.3	38	83	2	111	40	3	5	50	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1952936--1952996	20	3.3	20	61	25	53	45	6	9	37	1.63
1952930--1953000	34	2.1	34	94	0	124	45	7	8	39	1.62
1953090--1953117	13	2.2	13	100	0	56	64	7	7	21	1.43
1954750--1954842	21	4.6	20	79	4	105	39	18	23	18	1.92
1954747--1954842	41	2.3	41	96	0	174	40	17	22	18	1.91
1954769--1954900	41	3.2	41	80	6	117	38	20	20	20	1.94
1954831--1954925	20	4.7	20	80	2	82	35	23	17	23	1.95
1955113--1955156	22	2.0	22	95	0	79	20	45	15	18	1.85
1955420--1955457	20	1.9	20	88	0	58	13	15	21	50	1.78
1956774--1956818	18	2.5	18	85	0	63	26	42	15	15	1.87

Tables:   1   2   3   4   5   6   7   8   9