genome.fa.s7733.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007733.1 Hibiscus syriacus cultivar Beakdansim tig00109987_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1979160

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 996 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1957290--1957345	20	2.8	20	83	2	69	37	23	23	16	1.93
1957345--1957433	14	5.8	14	74	19	79	49	24	14	11	1.76
1957359--1957420	18	3.7	18	75	16	69	48	24	16	11	1.78
1957329--1957450	32	3.8	32	88	2	172	48	24	15	11	1.78
1957446--1957599	19	8.6	19	73	14	105	12	19	24	43	1.86
1957468--1957525	14	3.9	14	77	16	62	8	15	25	50	1.73
1957451--1957541	32	2.8	33	93	3	157	10	17	23	48	1.79
1957526--1957580	20	2.8	19	89	5	83	16	25	23	34	1.95
1959601--1959668	19	3.8	19	85	14	101	47	17	22	13	1.82
1959687--1959743	20	2.8	20	94	0	96	21	22	17	38	1.93
1960111--1960146	14	2.6	14	90	0	54	30	0	22	47	1.52
1961397--1961450	24	2.2	24	86	0	72	25	16	18	38	1.92
1961625--1961649	12	2.1	12	100	0	50	72	0	28	0	0.86
1963961--1964048	14	5.6	14	67	23	50	43	19	26	11	1.84
1963943--1964069	33	3.8	33	98	0	245	43	18	25	12	1.85
1964069--1964111	20	2.2	20	87	4	61	16	18	23	41	1.89
1964252--1964288	14	2.6	14	91	0	65	45	24	0	29	1.53
1965646--1965712	21	3.2	21	68	4	55	19	20	35	23	1.95
1965646--1965768	42	2.9	41	80	7	113	22	17	36	22	1.95
1967764--1967904	19	7.8	19	69	17	86	43	19	24	13	1.86
1967789--1967887	33	3.0	33	89	1	144	39	21	26	13	1.90
1967859--1967909	19	2.7	19	96	0	93	45	21	21	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1967905--1967971	19	3.5	19	83	2	80	10	16	23	49	1.77
1968513--1968606	40	2.3	41	81	5	111	21	19	22	37	1.95
1968494--1968586	20	4.7	20	82	0	96	23	18	24	33	1.97
1968575--1968626	20	2.5	21	84	3	70	17	23	19	40	1.91
1969705--1969745	22	1.9	22	90	5	66	26	0	0	73	0.84
1971902--1971981	16	5.0	16	89	0	115	58	22	8	10	1.57
1973043--1973104	24	2.6	24	89	0	97	54	20	12	11	1.68
1973451--1973497	18	2.6	19	83	6	53	61	0	0	38	0.96
1974741--1974826	39	2.2	40	78	14	99	23	24	18	33	1.97
1978491--1978525	2	18.0	2	94	5	63	48	0	0	51	1.00
1978651--1978689	7	5.7	7	87	6	62	56	12	0	30	1.37
1978651--1978689	20	1.9	21	89	5	62	56	12	0	30	1.37
1978651--1978689	13	2.9	14	88	7	62	56	12	0	30	1.37
1978651--1978694	13	3.3	13	83	3	61	56	11	0	31	1.35

Tables:   1   2   3   4   5   6   7   8   9

The End!