genome.fa.s7733.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007733.1 Hibiscus syriacus cultivar Beakdansim tig00109987_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1979160

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 996 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
839120--839152	2	16.5	2	93	0	57	51	0	3	45	1.16
845902--846092	37	5.2	38	81	6	164	38	25	12	24	1.90
845925--846092	74	2.3	74	81	2	185	38	25	11	24	1.89
846112--846262	37	4.0	38	78	11	157	39	25	11	23	1.88
846130--846250	41	3.0	40	79	11	126	38	25	11	24	1.89
846961--847018	31	1.9	30	86	10	82	48	3	13	34	1.60
852247--852325	38	2.1	38	83	4	97	40	7	6	45	1.58
853391--853429	19	2.1	19	95	0	69	20	15	20	43	1.88
854196--854278	24	3.2	24	67	18	58	45	2	4	46	1.37
854189--854278	29	3.3	29	65	29	70	45	2	4	47	1.35
854180--854284	54	1.9	55	90	3	169	43	2	3	49	1.35
854550--854574	2	12.5	2	100	0	50	48	0	0	52	1.00
856908--856981	29	2.6	29	93	0	121	45	10	16	27	1.80
857562--857631	2	35.0	2	100	0	140	50	0	0	50	1.00
857992--858036	23	2.0	22	87	12	65	51	0	2	46	1.13
858179--858320	59	2.4	59	80	5	162	31	19	3	45	1.67
859129--859191	20	3.1	20	88	4	99	12	28	39	19	1.88
860962--861073	55	2.1	54	89	5	172	37	24	5	33	1.78
886477--887146	105	6.4	105	94	1	1083	22	18	25	32	1.97
898424--898501	32	2.5	32	78	15	83	73	0	14	12	1.11
898452--898513	32	1.9	32	83	6	81	72	0	12	14	1.12
898588--898613	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924507--924599	21	4.6	20	78	4	96	38	18	24	18	1.92
924504--924599	41	2.3	41	98	0	183	39	17	23	18	1.92
924507--924599	20	4.6	20	78	4	96	38	18	24	18	1.92
924526--924660	41	3.3	41	83	6	141	37	21	22	19	1.95
924588--924682	20	4.7	20	76	6	84	36	23	17	22	1.95
924507--924682	20	8.6	20	68	13	83	38	20	21	20	1.94
924585--924682	41	2.4	41	89	0	151	38	22	17	21	1.93
924849--924891	22	2.0	22	95	0	77	20	41	16	20	1.90
926505--926549	18	2.5	18	85	0	63	26	42	15	15	1.87
927033--927088	20	2.8	20	81	2	69	39	21	23	16	1.92
927077--927134	14	3.9	14	79	16	71	48	25	17	8	1.75
927061--927151	32	2.8	33	94	3	166	47	23	18	10	1.80
927041--927156	19	6.6	19	70	21	83	43	23	21	12	1.86
927168--927225	14	3.9	14	77	16	62	8	17	24	50	1.74
927163--927241	32	2.4	33	93	2	133	10	18	22	48	1.78
927226--927280	20	2.8	19	89	5	83	16	25	23	34	1.95
929138--929173	14	2.6	14	90	0	54	30	0	22	47	1.52
929290--929356	18	3.8	19	79	18	83	46	16	22	14	1.84
929382--929432	20	2.5	20	87	0	75	19	21	23	35	1.96
929795--929830	14	2.6	14	90	0	54	30	0	22	47	1.52
929395--930781	581	2.4	581	98	1	2650	32	12	19	36	1.89
930376--930411	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931648--931706	24	2.5	24	82	0	73	28	16	18	35	1.93
934193--934290	19	5.7	19	69	22	90	43	19	24	12	1.85
934193--934286	33	2.8	33	98	0	179	43	19	24	12	1.85
934286--934328	20	2.2	20	87	4	61	16	18	23	41	1.89
934469--934505	14	2.6	14	91	0	65	45	24	0	29	1.53
935891--935982	42	2.2	41	82	3	112	25	15	38	21	1.92
937981--938160	19	9.8	19	72	14	110	44	21	20	13	1.85
938076--938165	19	4.7	19	90	2	144	45	22	18	13	1.84
937981--938165	33	5.1	38	79	11	156	43	21	21	13	1.86
938161--938205	19	2.4	19	92	0	72	8	15	26	48	1.74
938758--938851	20	4.7	20	77	2	80	23	17	24	35	1.95
938840--938935	41	2.3	41	98	0	147	18	23	17	39	1.92
938840--938932	20	4.6	20	78	4	96	18	24	18	38	1.92
945795--945902	30	3.6	29	83	9	119	31	12	13	41	1.83
948843--948896	20	2.7	20	85	0	72	14	18	16	50	1.79
949361--949474	31	3.5	32	78	5	106	39	4	5	50	1.45
949369--949474	33	3.2	33	76	9	110	38	4	4	51	1.44
949535--949601	31	2.2	29	84	5	80	56	7	2	32	1.42
950810--950880	36	2.0	36	100	0	142	12	16	25	45	1.83
952085--952130	24	2.0	24	83	8	60	28	15	26	30	1.96
952123--952178	23	2.4	23	82	11	62	37	26	19	16	1.92
952138--952228	46	2.0	46	82	4	112	32	24	23	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
952136--952232	23	4.2	23	73	5	79	35	22	22	19	1.96
952308--952380	30	2.4	30	81	0	74	36	21	8	32	1.83
952868--952969	20	5.6	20	65	25	82	27	21	17	33	1.96
952868--952985	35	3.4	35	92	0	200	26	22	17	33	1.96
959726--959790	33	2.0	33	87	3	96	24	13	13	47	1.80
964910--964951	15	2.8	15	88	0	66	21	9	2	66	1.32
967933--968028	2	52.0	2	68	15	64	51	0	0	48	1.00
967954--967990	15	2.5	15	86	0	56	54	0	0	45	1.00
967933--968030	40	2.5	39	88	6	144	51	0	0	48	1.00
968420--968473	27	2.0	28	88	3	83	72	1	1	24	1.05
968718--968787	26	2.7	26	76	8	79	68	7	0	24	1.14
968746--968784	10	3.7	10	80	12	51	74	5	0	20	1.01
968739--968784	22	2.0	23	95	4	85	76	4	0	19	0.96
977360--977477	60	2.0	59	81	5	139	41	9	9	39	1.69
979970--980036	20	3.3	20	95	0	116	47	4	20	26	1.69
982104--982202	20	4.7	21	80	12	69	23	33	21	22	1.97
982147--982202	20	2.8	20	97	0	103	25	26	23	25	2.00
986182--986784	154	3.9	153	93	2	994	19	16	23	39	1.92
985871--986784	307	3.0	306	89	4	1391	20	17	23	39	1.92
990322--990418	24	4.0	24	90	2	88	10	16	24	48	1.77
990332--990409	14	6.1	14	75	22	91	8	15	25	50	1.73
990309--990418	48	2.3	48	84	6	134	10	16	23	49	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
990333--990431	24	4.1	24	93	0	144	11	14	22	52	1.72
991513--991567	16	3.4	16	92	0	92	7	10	23	58	1.57
991640--991672	16	2.1	16	100	0	66	6	12	24	57	1.57
996074--996121	19	2.5	19	75	3	51	31	4	2	62	1.26
1010516--1010609	39	2.3	39	83	8	118	12	9	38	39	1.76
1018352--1018377	4	6.5	4	100	0	52	50	0	0	50	1.00
1030233--1030380	60	2.5	59	81	4	145	44	5	18	31	1.72
1032445--1032502	30	2.0	29	86	3	80	37	17	15	29	1.90
1032777--1032808	2	16.0	2	93	0	55	53	0	0	46	1.00
1040767--1040791	12	2.1	12	100	0	50	24	0	0	76	0.80
1050646--1050743	39	2.5	39	93	0	160	20	26	27	25	1.99
1062018--1062108	40	2.3	40	94	0	164	26	15	28	29	1.96
1062017--1062094	20	3.9	21	76	15	85	25	12	30	30	1.93
1062038--1062101	20	3.2	20	75	16	78	26	12	28	32	1.93
1062038--1062109	20	3.6	20	75	14	76	26	15	26	31	1.95
1066209--1066243	15	2.3	15	100	0	70	42	0	5	51	1.25
1073419--1073476	29	2.0	29	93	3	100	39	12	8	39	1.73
1073768--1073794	4	6.8	4	100	0	54	25	0	0	74	0.83
1074775--1074809	13	2.7	13	100	0	70	74	0	11	14	1.08
1074922--1074959	20	1.9	20	88	0	58	52	2	10	34	1.50
1086551--1087129	222	2.6	220	89	2	865	38	9	15	36	1.81
1087860--1087903	21	2.1	21	82	0	52	54	2	4	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1089961--1090041	2	45.0	2	73	20	63	44	0	0	55	0.99
1089964--1090049	23	4.0	22	76	20	51	45	0	0	54	0.99
1089962--1090041	32	2.4	36	84	14	102	45	0	0	55	0.99
1093268--1093310	21	2.0	21	81	0	50	30	30	25	13	1.94
1093334--1093376	22	2.0	22	90	0	68	25	37	25	11	1.90
1093875--1093904	2	15.0	2	100	0	60	50	0	0	50	1.00
1094779--1094986	103	2.0	103	96	0	380	25	13	24	36	1.92
1095003--1095070	23	3.0	23	82	0	82	20	25	26	27	1.99
1096911--1096939	2	15.0	2	92	7	51	48	0	0	51	1.00
1096913--1096938	13	2.0	13	100	0	52	46	0	0	53	1.00

Tables:   1   2   3   4   5   6   7   8   9