genome.fa.s7760.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007760.1 Hibiscus syriacus cultivar Beakdansim tig00110029_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2010226

Tables:   1   2   3   4   5   6   7   8   

This is table  1  of  8  ( 949 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163--208	10	4.5	10	81	5	56	82	0	17	0	0.67
163--211	21	2.4	21	86	3	73	81	0	18	0	0.69
164--211	24	2.0	25	88	12	73	81	0	18	0	0.70
8993--9043	19	2.6	20	87	3	68	45	5	13	35	1.68
9833--9881	25	1.9	25	83	4	62	44	6	14	34	1.70
12464--12518	23	2.3	25	81	6	69	61	10	18	9	1.54
18632--18683	21	2.6	21	90	6	81	32	13	7	46	1.72
22362--22399	20	1.9	20	89	10	60	39	18	18	23	1.92
23782--23869	35	2.5	36	86	1	124	30	35	4	29	1.78
24244--24280	19	1.9	19	88	0	56	83	5	10	0	0.79
24463--24514	16	3.3	15	77	17	52	15	17	0	67	1.24
28297--28351	16	3.0	20	66	33	59	30	32	5	30	1.80
29718--29788	30	2.4	29	82	13	99	71	5	8	14	1.28
34297--34348	21	2.6	21	90	6	81	32	13	7	46	1.72
38229--38280	21	2.6	21	84	6	72	32	11	7	48	1.68
44603--44628	5	5.2	5	100	0	52	0	19	0	80	0.71
56889--56918	13	2.4	13	94	5	53	26	30	0	43	1.55
62927--63108	90	2.0	91	85	1	249	28	23	26	21	1.99
64770--64854	35	2.4	37	86	4	120	32	36	2	28	1.70
69928--69986	31	1.9	31	82	6	75	45	13	5	35	1.66
76604--76654	15	3.3	15	81	13	59	68	0	9	21	1.18
83402--83467	15	4.4	14	80	14	69	1	15	3	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83413--83465	10	5.3	9	77	18	52	0	15	1	83	0.74
83413--83463	12	3.8	13	78	21	52	0	15	1	82	0.76
83401--83463	29	2.2	29	80	5	76	1	15	3	79	0.94
83419--83468	17	3.0	17	83	16	61	0	20	2	78	0.86
83402--83467	8	7.6	8	75	14	51	1	15	3	80	0.91
93870--93911	21	2.0	21	85	0	57	33	9	33	23	1.87
95545--95583	11	3.7	11	86	6	55	0	10	5	84	0.76
100090--100127	20	1.9	20	89	10	60	39	23	18	18	1.92
106015--106071	25	2.3	25	100	0	114	40	14	14	31	1.85
112730--112754	8	3.1	8	100	0	50	76	0	24	0	0.80
112713--112764	16	3.1	16	81	13	52	75	1	21	1	1.00
134713--134743	12	2.6	12	94	0	53	64	9	19	6	1.45
140683--140731	20	2.4	20	89	3	71	81	12	6	0	0.86
148832--148883	21	2.6	21	88	11	74	32	11	7	48	1.68
149854--149891	19	2.1	19	90	9	62	21	23	21	34	1.97
158555--158609	25	2.2	26	80	9	60	72	1	9	16	1.18
164770--164814	20	2.2	21	88	4	65	0	2	13	84	0.72
164784--164816	13	2.5	13	90	0	57	0	0	9	90	0.44
166288--166344	24	2.4	24	88	8	82	7	17	12	63	1.50
168730--168784	24	2.4	24	87	6	78	7	18	14	60	1.57
168810--168836	12	2.2	12	100	0	54	14	22	7	55	1.64
169117--169160	6	7.2	6	82	12	54	0	18	2	79	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169117--169160	13	3.6	12	82	11	54	0	18	2	79	0.83
171751--171780	14	2.1	14	100	0	60	36	16	13	33	1.88
197660--197711	21	2.6	20	90	6	79	32	13	5	48	1.66
198131--198167	17	2.2	17	90	9	58	27	10	0	62	1.28
203972--204014	23	1.9	21	81	13	50	32	18	13	34	1.90
222271--222319	24	2.1	24	88	3	73	8	14	16	61	1.56
224720--224775	24	2.4	24	87	3	78	10	17	12	58	1.61
225443--225471	15	1.9	15	100	0	58	62	0	27	10	1.28
225612--225687	35	2.2	35	85	0	98	32	5	35	26	1.79
227312--227353	22	1.9	22	85	9	59	40	19	0	40	1.51
229732--229785	19	2.9	19	79	20	62	75	5	14	3	1.12
239697--239743	6	7.5	6	81	13	51	82	2	14	0	0.75
239706--239743	7	5.4	7	90	9	60	84	0	15	0	0.63
239706--239743	13	2.7	14	92	8	60	84	0	15	0	0.63
239935--239992	15	3.6	16	73	13	57	17	17	0	65	1.27
243733--243769	14	2.7	14	91	4	58	24	40	0	35	1.55
245840--245894	20	2.8	21	75	10	62	25	25	12	36	1.91
249395--249462	35	1.9	36	93	3	120	30	36	2	29	1.72
259580--259616	14	2.7	14	91	4	58	24	40	0	35	1.55
261679--261733	20	2.8	21	75	10	62	25	27	12	34	1.92
265202--265269	35	1.9	36	93	3	120	30	36	2	29	1.72
276168--276227	27	2.2	27	96	0	111	35	31	6	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285994--286035	5	8.6	5	84	5	59	0	19	2	78	0.86
285991--286034	19	2.3	19	88	7	63	0	20	2	77	0.88
285991--286035	14	3.2	13	82	17	54	0	20	2	77	0.87
289324--289366	19	2.2	18	84	12	50	76	0	6	16	0.99
297288--297462	90	2.0	89	93	1	296	36	12	6	44	1.68
312782--312963	91	2.0	91	86	0	256	29	22	26	20	1.99
317168--317350	91	2.0	91	90	0	285	28	23	27	20	1.99
321067--321101	17	2.1	17	94	0	61	82	2	14	0	0.77
321067--321102	11	3.3	11	92	7	56	80	2	16	0	0.83
327025--327078	23	2.3	24	87	3	83	62	12	14	9	1.53
327072--327106	17	2.1	17	89	10	54	82	0	14	2	0.77
339934--340104	83	2.0	85	85	2	229	39	16	12	30	1.87
353183--353227	14	3.2	14	83	0	63	42	0	35	22	1.54
359016--359040	13	1.9	13	100	0	50	28	32	0	40	1.57
361804--361857	23	2.3	25	81	12	69	7	14	11	66	1.43
364290--364347	25	2.3	26	93	3	100	22	18	34	24	1.96
371711--371741	2	15.5	2	100	0	62	51	0	0	48	1.00
372824--372875	22	2.4	22	86	0	68	30	26	13	28	1.94
374817--374867	23	2.2	23	89	6	77	13	13	11	60	1.59
374817--374875	23	2.6	22	84	10	75	13	11	13	61	1.58
381223--381247	8	3.1	8	100	0	50	36	0	0	64	0.94
385253--385297	13	3.7	12	80	14	56	80	2	15	2	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385253--385297	6	7.3	6	82	12	56	80	2	15	2	0.92
401150--401281	23	6.0	23	74	15	136	25	9	25	40	1.85
401154--401277	41	3.0	41	86	3	167	25	9	24	41	1.85
401154--401275	44	2.9	42	87	3	165	25	9	24	40	1.84
401827--401876	2	26.0	2	88	8	77	50	0	2	48	1.12
408024--408176	23	7.0	23	76	18	150	24	9	25	40	1.85
408028--408176	44	3.5	44	85	9	225	23	10	25	40	1.85
408527--408573	2	23.5	2	93	0	76	51	2	0	46	1.13
413845--413996	23	6.9	22	74	14	127	26	10	23	39	1.87
413852--413996	21	6.6	21	75	15	98	25	11	22	40	1.87
413849--413996	44	3.4	44	87	0	215	25	10	22	40	1.87
422580--422643	29	2.1	31	85	5	87	42	7	15	34	1.76
422580--422662	31	2.8	29	83	7	94	42	7	18	32	1.77
425470--425502	16	2.1	16	100	0	66	21	48	18	12	1.80
432585--432623	17	2.3	17	100	0	78	17	46	23	12	1.83
434017--434051	17	2.1	17	88	0	52	28	2	5	62	1.32
435659--435710	24	2.1	25	89	3	79	63	13	9	13	1.52
442387--442460	25	2.9	26	91	4	123	29	31	17	21	1.96
444657--444774	48	2.6	44	77	10	121	30	21	7	40	1.81
451525--451633	55	1.9	55	83	5	137	29	17	6	46	1.73
453015--453055	21	1.9	22	85	5	57	60	9	4	24	1.47
454179--454268	31	2.9	31	86	1	128	34	34	4	26	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469417--469485	20	3.5	20	74	7	77	20	24	15	39	1.92
498753--498785	16	1.9	18	88	11	52	36	9	6	48	1.60
501523--501818	35	8.5	35	79	7	307	40	10	4	44	1.59
501525--501818	103	2.8	104	81	6	321	40	10	4	44	1.59
501523--501873	70	5.0	68	77	8	255	41	9	4	44	1.57
502613--502678	31	2.1	31	86	5	89	62	0	3	34	1.11
502627--502699	31	2.3	32	79	11	80	53	4	5	36	1.43
513529--513621	42	2.2	42	96	0	168	23	22	21	32	1.98
513660--513748	42	2.1	42	87	0	124	24	24	23	26	2.00
513823--513977	53	2.9	53	88	1	222	32	22	25	18	1.97

Tables:   1   2   3   4   5   6   7   8