genome.fa.s7760.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007760.1 Hibiscus syriacus cultivar Beakdansim tig00110029_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2010226

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 949 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1710871--1710957	20	4.1	21	80	13	99	37	0	3	58	1.15
1717825--1717853	13	2.1	14	93	6	51	44	6	13	34	1.71
1718347--1718392	23	2.0	23	91	0	74	30	17	26	26	1.97
1722372--1722411	21	1.9	21	89	0	62	30	7	7	55	1.56
1724231--1724284	21	2.6	21	93	0	99	20	29	25	24	1.99
1724399--1724453	20	2.8	19	83	8	74	23	16	34	25	1.95
1725147--1725205	9	6.8	9	75	14	52	37	0	0	62	0.95
1725132--1725217	34	2.5	34	94	1	145	40	0	1	58	1.06
1729430--1729464	16	2.3	15	90	5	52	40	0	0	60	0.97
1729633--1729671	17	2.2	19	86	9	55	28	0	7	64	1.21
1731049--1731088	17	2.2	20	86	13	59	52	0	30	17	1.45
1733521--1733605	42	2.0	42	90	0	134	23	10	16	49	1.77
1737109--1737146	19	2.0	19	100	0	76	31	36	0	31	1.58
1739983--1740430	221	2.0	224	97	2	857	33	15	16	35	1.90
1741900--1742023	61	2.0	61	100	0	248	45	17	8	28	1.77
1743530--1743696	79	2.1	79	87	2	237	30	20	13	35	1.91
1748486--1748697	108	2.0	103	94	5	372	41	10	17	30	1.83
1755524--1755550	8	3.4	8	100	0	54	22	0	0	77	0.76
1759325--1759399	27	2.6	27	81	8	78	36	16	2	45	1.61
1763548--1763587	20	2.0	20	95	0	71	10	22	35	32	1.87
1763624--1763665	21	2.0	21	95	4	77	9	23	42	23	1.83
1763472--1763672	75	2.7	75	87	6	293	18	21	28	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1765866--1765944	23	3.6	22	83	5	88	20	25	32	21	1.97
1767840--1767896	27	2.1	27	96	0	105	26	15	24	33	1.95
1767950--1767992	18	2.4	18	100	0	86	9	16	23	51	1.73
1774241--1774340	50	2.0	50	98	0	191	40	17	14	29	1.88
1784938--1785029	25	3.8	25	87	7	127	47	0	2	50	1.13
1784938--1785022	16	5.2	16	75	14	52	49	0	2	48	1.14
1785000--1785045	15	3.2	15	82	11	53	34	0	0	65	0.93
1784991--1785027	7	5.0	7	87	12	56	40	0	0	59	0.97
1784984--1785044	23	2.7	23	80	14	72	40	0	0	59	0.98
1785108--1785139	17	1.9	17	93	6	57	34	0	0	65	0.93
1786951--1786988	19	2.0	19	94	0	67	23	10	28	36	1.88
1788620--1788729	54	2.0	54	89	0	166	24	13	25	36	1.92
1795160--1795219	29	2.2	27	85	11	86	43	10	5	41	1.60
1796899--1797477	292	2.0	290	87	2	838	26	13	20	39	1.89
1797913--1798022	57	1.9	57	86	0	157	23	14	24	37	1.92
1799051--1799089	19	2.0	20	85	10	53	61	7	7	23	1.49
1799272--1799741	242	1.9	242	92	0	796	42	7	20	29	1.79
1800376--1800429	22	2.6	20	83	16	74	33	14	25	25	1.95
1800857--1801235	57	6.6	57	90	0	580	37	10	17	34	1.84
1801369--1801422	27	2.0	27	92	0	90	50	12	11	25	1.74
1804680--1804808	24	5.4	23	81	5	80	44	18	13	23	1.86
1804694--1804812	24	5.0	24	83	6	152	42	18	15	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1805851--1805885	15	2.3	15	90	0	52	28	22	31	17	1.96
1807973--1808091	24	5.0	24	85	6	143	39	19	16	24	1.92
1808009--1808109	48	2.1	48	87	3	141	41	19	15	22	1.90
1810561--1810595	18	1.9	18	100	0	70	11	22	45	20	1.82
1813064--1813115	22	2.5	21	87	12	72	36	15	21	26	1.93
1812970--1813175	95	2.2	96	83	7	253	32	16	22	28	1.95
1813542--1813920	57	6.6	57	85	5	480	35	10	19	34	1.86
1813542--1813860	113	2.8	113	90	3	482	37	10	18	34	1.84
1813542--1813860	170	1.9	170	90	2	507	37	10	18	34	1.84
1825138--1825176	19	2.0	21	90	10	64	58	10	7	23	1.56
1826044--1827577	734	2.1	734	87	4	2221	38	13	15	32	1.87
1829182--1829341	77	2.0	80	90	6	254	44	10	10	35	1.73
1837471--1837628	38	4.2	38	77	8	144	45	7	3	43	1.50
1840699--1840741	12	3.7	12	84	6	52	25	9	9	55	1.61
1854990--1855047	30	1.9	30	92	0	98	18	10	22	48	1.78
1855020--1855142	21	5.7	21	75	14	106	21	11	24	42	1.86
1855028--1855148	44	2.8	44	89	0	179	23	11	25	39	1.88
1861500--1861725	42	5.2	44	90	5	372	22	10	25	41	1.86
1864881--1864987	44	2.4	44	89	6	153	32	22	6	38	1.80
1873209--1873251	21	2.0	21	100	0	86	32	20	0	46	1.51
1883795--1883871	37	2.1	37	85	4	102	48	1	2	48	1.23
1894657--1894731	37	2.1	36	82	2	87	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1897468--1897495	12	2.3	12	100	0	56	14	0	0	85	0.59
1908206--1908261	24	2.3	24	100	0	112	21	14	7	57	1.61
1908893--1908936	18	2.4	19	84	3	54	18	6	4	70	1.27
1913850--1913904	5	10.8	5	77	11	58	7	21	50	20	1.71
1913851--1913906	19	2.7	22	81	10	73	8	21	50	19	1.75
1913901--1913951	19	2.7	20	81	9	70	25	29	29	15	1.96
1913901--1913950	9	5.3	9	86	9	64	26	30	30	14	1.94
1921654--1922078	213	2.0	212	95	1	762	36	20	7	35	1.81
1925454--1925497	23	1.9	24	86	9	65	61	6	4	27	1.41
1925925--1925970	5	9.0	5	80	4	56	76	4	0	19	0.96
1925926--1925973	21	2.3	21	88	0	69	77	4	0	18	0.93
1927931--1928023	3	29.3	3	76	10	87	60	1	3	35	1.20
1927932--1928023	13	6.9	13	76	12	89	59	1	3	35	1.21
1929531--1929560	11	2.6	12	94	5	53	10	3	0	86	0.67
1945114--1945163	2	25.5	2	95	4	93	50	0	0	50	1.00
1945114--1945171	14	4.1	15	89	6	61	51	1	0	46	1.11
1945385--1945483	3	30.7	3	74	11	72	57	1	5	36	1.27
1945386--1945483	13	7.0	13	75	15	88	57	1	5	36	1.28
1945395--1945474	30	2.7	30	92	1	135	56	1	5	37	1.29
1949580--1949655	32	2.4	32	93	0	134	23	28	15	31	1.96
1950484--1950523	19	2.0	20	85	4	55	37	2	0	60	1.11
1950483--1950642	75	2.1	75	85	5	209	37	2	4	55	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1950663--1950943	155	1.8	154	81	8	358	51	4	3	40	1.40
1952714--1952754	21	1.9	22	85	5	57	65	7	14	12	1.45
1954446--1954475	14	2.1	15	93	6	53	40	20	6	33	1.78
1956625--1956709	10	8.7	9	71	16	62	29	29	27	14	1.95
1956632--1956709	30	2.6	30	78	17	81	30	28	26	14	1.95
1956625--1956709	20	4.3	20	78	14	88	29	29	27	14	1.95
1963853--1963895	19	2.3	19	83	0	50	9	18	46	25	1.79
1963902--1963983	28	2.9	28	83	7	94	31	29	24	14	1.95
1963902--1963983	19	4.3	18	83	9	92	31	29	24	14	1.95
1963902--1963983	9	8.7	9	79	10	92	31	29	24	14	1.95
1963946--1963984	21	1.9	21	89	5	62	35	25	23	15	1.94
1964709--1964859	40	3.8	40	90	0	248	34	28	14	22	1.93
1965730--1965790	31	2.0	30	84	9	79	36	22	6	34	1.81
1970775--1970813	19	2.0	20	85	14	55	46	7	5	41	1.55
1972809--1972833	10	2.5	10	100	0	50	52	20	8	20	1.71
1973706--1973734	14	2.1	14	93	6	51	48	20	0	31	1.50
1978626--1978665	13	3.0	13	81	3	53	62	0	25	12	1.30
1990285--1990323	21	1.9	20	84	5	51	28	15	17	38	1.91
1993277--1993301	10	2.5	10	100	0	50	52	20	8	20	1.71
1993601--1993651	21	2.4	21	96	0	93	27	33	11	27	1.92
2004433--2004462	15	2.0	15	93	0	51	13	26	43	16	1.85

Tables:   1   2   3   4   5   6   7   8

The End!