genome.fa.s7760.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007760.1 Hibiscus syriacus cultivar Beakdansim tig00110029_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2010226

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 949 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1522917--1522981	23	2.8	23	83	0	85	40	20	4	35	1.73
1522336--1524582	427	5.0	427	78	12	2170	40	12	7	40	1.71
1522087--1526184	917	4.4	931	90	6	5808	40	11	7	40	1.70
1523407--1523479	23	3.2	23	94	0	128	38	20	5	35	1.76
1523788--1523830	21	2.1	20	86	4	59	46	6	11	34	1.67
1523848--1523906	23	2.6	23	88	0	82	40	16	5	37	1.71
1524324--1524373	23	2.2	23	92	0	82	38	22	6	34	1.78
1523871--1526184	489	4.8	470	96	2	3919	40	11	7	40	1.70
1524790--1524862	23	3.2	23	92	0	119	38	21	5	34	1.77
1525277--1525349	23	3.2	23	92	0	119	38	21	5	34	1.77
1523668--1526184	975	2.6	957	96	2	4598	40	11	7	39	1.70
1525766--1525838	23	3.2	23	90	0	110	38	20	6	34	1.79
1526184--1526248	25	2.6	25	95	0	112	38	12	9	40	1.75
1528713--1529704	183	5.4	183	95	1	1731	32	16	14	36	1.89
1528713--1529704	365	2.7	365	94	1	1729	32	16	14	36	1.89
1528713--1529704	548	1.8	547	94	1	1772	32	16	14	36	1.89
1531498--1531544	24	2.0	24	83	8	60	57	12	2	27	1.47
1534843--1534909	26	2.6	26	79	11	75	65	0	16	17	1.27
1534854--1534897	20	2.2	20	84	4	63	65	0	15	18	1.27
1541745--1541791	24	2.0	24	83	8	60	57	12	2	27	1.47
1542862--1542942	3	27.0	3	79	0	63	20	33	9	35	1.86
1542862--1542946	12	7.1	12	82	0	89	21	32	10	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1542866--1542959	18	5.2	19	76	10	81	19	32	10	37	1.86
1542900--1542954	12	4.6	12	90	0	83	18	34	10	36	1.86
1542896--1542959	6	10.7	6	79	0	65	18	32	9	39	1.83
1544035--1545195	200	5.9	199	89	6	1762	31	17	14	36	1.90
1544763--1545132	185	2.0	185	98	0	722	33	18	12	35	1.89
1544035--1545195	584	2.0	591	95	3	2086	31	17	14	36	1.90
1547145--1547210	33	2.0	33	90	0	105	22	48	0	28	1.51
1547244--1547308	21	3.1	21	93	0	103	16	30	10	41	1.83
1549332--1549384	24	2.2	24	83	6	63	26	7	13	52	1.66
1549524--1549566	20	2.3	18	85	14	61	20	16	11	51	1.75
1549529--1549575	20	2.4	19	82	10	67	19	17	10	53	1.72
1549496--1549968	181	2.6	182	89	1	707	26	16	14	42	1.86
1553152--1553269	60	2.0	60	81	3	139	38	18	11	32	1.86
1554836--1554926	32	2.8	32	86	0	137	37	12	8	41	1.73
1556701--1557000	149	2.0	149	98	0	573	41	14	8	36	1.76
1560326--1560386	30	2.0	30	81	6	70	21	27	9	40	1.85
1566474--1566602	59	2.2	59	81	2	143	29	19	24	27	1.98
1576738--1576763	8	3.2	8	100	0	52	46	53	0	0	1.00
1577083--1577120	17	2.2	18	85	4	51	18	5	10	65	1.41
1578935--1578974	19	2.1	19	95	0	71	40	0	15	45	1.46
1579942--1579970	15	1.9	15	100	0	58	34	6	31	27	1.83
1580528--1580577	24	2.1	23	85	10	66	18	2	26	54	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1582956--1583001	24	1.9	24	95	0	83	28	15	15	41	1.87
1583805--1583836	7	4.6	7	96	0	55	25	28	3	43	1.69
1584763--1584968	64	3.2	62	74	13	182	27	15	24	33	1.95
1584865--1584901	19	1.9	19	94	0	65	27	16	35	21	1.94
1584929--1584968	21	1.9	21	94	0	71	22	15	30	32	1.94
1584929--1584975	21	2.2	21	88	0	67	21	14	27	36	1.93
1591535--1592010	139	3.5	139	86	2	660	25	20	17	37	1.94
1592670--1593226	109	5.1	108	84	2	670	39	12	20	27	1.89
1593053--1593118	21	3.4	21	64	23	54	37	12	21	28	1.89
1592671--1593234	36	15.6	36	83	2	657	39	12	20	27	1.89
1593267--1593431	75	2.2	74	84	6	201	41	10	17	29	1.84
1593284--1593431	73	2.0	74	84	5	192	41	10	16	31	1.82
1593467--1593628	85	1.9	85	88	0	243	35	17	22	24	1.95
1593896--1593967	20	3.5	20	69	14	56	31	22	23	22	1.98
1593876--1593967	42	2.2	42	96	0	166	32	21	22	22	1.98
1597748--1597831	10	8.5	10	68	16	59	63	8	2	26	1.35
1597749--1597849	29	3.5	29	100	0	202	63	8	2	24	1.38
1601716--1601805	31	2.9	30	79	8	101	13	25	30	31	1.94
1601720--1601817	31	3.2	29	77	11	88	13	28	29	28	1.94
1603645--1603737	48	1.9	48	84	4	125	35	29	11	23	1.90
1610625--1610713	43	2.1	43	86	0	124	38	13	16	31	1.88
1611514--1611574	22	2.7	23	84	5	70	31	9	13	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1611579--1611637	27	2.2	27	82	11	68	37	8	6	47	1.61
1611679--1611709	3	10.3	3	100	0	62	32	0	0	67	0.91
1611647--1611696	24	2.0	26	84	7	68	38	4	0	58	1.17
1612566--1612613	24	2.0	23	84	4	60	29	8	6	56	1.53
1612742--1612828	10	8.7	10	70	8	52	21	4	1	72	1.09
1612724--1612788	15	4.3	14	80	16	76	16	1	1	80	0.88
1612724--1612786	20	3.2	20	76	13	67	15	1	1	80	0.86
1612724--1612820	40	2.4	39	80	10	97	18	4	2	75	1.06
1616826--1617027	99	2.0	99	88	3	300	34	16	19	30	1.94
1618796--1618846	22	2.3	23	86	3	68	35	11	11	41	1.78
1620008--1620078	26	2.8	24	77	14	63	19	2	4	73	1.13
1620124--1620173	9	4.9	10	79	18	50	22	2	0	76	0.89
1620122--1620180	25	2.4	26	81	16	72	20	1	0	77	0.85
1620124--1620182	15	3.6	16	76	15	50	20	1	0	77	0.85
1622030--1622070	18	2.3	18	95	0	73	19	12	36	31	1.89
1636254--1636535	136	2.0	138	89	5	435	49	4	6	39	1.50
1639434--1639500	14	4.8	13	75	21	57	58	1	1	38	1.17
1639455--1639533	5	15.4	5	75	19	58	55	3	2	37	1.31
1639434--1639488	14	3.7	15	81	13	60	60	1	0	38	1.08
1639439--1639533	12	7.5	12	75	15	77	55	4	2	37	1.31
1640976--1641173	2	108.0	2	67	23	98	53	5	0	40	1.27
1640969--1641172	41	5.0	42	75	15	169	53	5	0	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1641011--1641163	7	21.6	7	77	15	127	54	4	0	41	1.21
1641031--1641125	5	19.8	5	70	23	71	54	2	0	43	1.12
1640969--1641163	14	13.9	14	74	15	145	54	5	0	40	1.27
1640978--1641170	12	15.0	14	72	19	120	53	5	0	40	1.27
1649138--1649260	63	2.0	63	82	4	151	29	26	26	18	1.98
1660855--1661132	5	54.6	5	68	23	122	52	5	2	39	1.35
1660823--1660956	11	12.7	10	70	17	51	57	3	2	36	1.29
1660877--1661148	2	144.5	2	67	24	130	51	5	2	40	1.37
1660833--1661148	7	44.1	7	71	18	188	53	5	2	39	1.35
1661762--1661786	2	12.5	2	100	0	50	48	0	0	52	1.00
1662467--1662603	70	2.0	69	86	4	195	27	19	20	32	1.97
1662589--1662780	103	1.9	103	84	5	262	33	21	17	28	1.96
1665811--1665851	21	2.0	20	85	4	55	51	0	2	46	1.14
1668662--1668737	30	2.5	30	87	4	100	38	5	9	47	1.58
1673831--1673903	3	25.7	3	78	10	82	61	0	0	38	0.96
1673826--1673903	18	4.6	17	84	7	97	60	0	0	39	0.97
1673825--1673912	18	4.5	19	73	18	65	56	0	0	43	0.99
1678747--1678870	60	2.1	60	85	0	167	35	11	18	34	1.87
1682109--1682154	22	2.1	22	100	0	92	47	4	17	30	1.67
1690264--1690450	102	1.8	102	83	10	247	46	2	4	47	1.34
1691685--1692235	46	12.0	46	91	1	881	21	22	13	42	1.87
1691717--1692209	20	21.7	20	64	24	130	20	22	13	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1691969--1692260	26	12.5	24	63	21	68	21	20	14	43	1.87
1692160--1692296	72	1.9	72	93	1	240	24	18	13	43	1.86
1692788--1692958	94	1.8	93	82	9	222	26	23	11	37	1.90
1705828--1705870	13	3.3	13	90	0	50	27	13	18	39	1.89
1705838--1705892	26	2.1	25	83	12	67	25	14	18	41	1.88
1705964--1705992	2	14.5	2	100	0	58	48	0	0	51	1.00
1710373--1710445	24	3.0	24	69	0	65	21	31	5	41	1.76
1710776--1710840	34	2.0	32	87	6	94	33	0	7	58	1.27
1710829--1710877	20	2.4	21	77	16	59	36	2	18	42	1.62
1710870--1710954	11	8.0	11	68	21	65	37	0	3	58	1.15

Tables:   1   2   3   4   5   6   7   8