genome.fa.s7760.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007760.1 Hibiscus syriacus cultivar Beakdansim tig00110029_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2010226

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 949 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515515--515582	29	2.4	28	82	4	82	48	22	2	26	1.64
515534--515668	29	4.7	29	88	1	128	45	21	7	25	1.78
515557--515666	58	1.9	58	88	3	168	45	19	9	26	1.79
521873--521940	29	2.3	29	85	5	84	42	22	8	26	1.82
521918--521993	29	2.6	29	89	0	125	46	21	6	26	1.75
522016--522051	12	2.8	13	91	8	56	13	25	44	16	1.85
523723--523782	14	4.3	14	75	21	54	23	3	8	65	1.36
526363--526408	2	23.0	2	100	0	92	50	0	0	50	1.00
526453--526492	19	2.1	19	85	4	53	32	7	2	57	1.40
526531--526585	18	3.2	17	84	5	67	34	3	0	61	1.13
526536--526584	16	2.9	17	87	6	64	38	4	0	57	1.18
535084--535125	18	2.3	18	88	8	59	16	42	19	21	1.89
535193--535269	25	3.0	25	79	7	64	35	3	10	50	1.55
535260--535317	29	2.0	30	82	3	73	32	5	13	48	1.65
540442--540554	31	3.7	31	96	3	203	30	10	26	32	1.90
541886--541917	16	2.0	16	93	0	55	40	6	12	40	1.68
542063--542260	39	5.0	39	88	1	252	22	17	26	32	1.96
543766--543811	23	2.0	23	82	0	56	30	17	34	17	1.93
547549--547589	4	10.2	4	94	0	73	70	0	29	0	0.87
552244--552292	20	2.5	20	93	0	80	26	20	26	26	1.99
559689--559741	20	2.7	19	85	5	70	37	15	28	18	1.91
559781--559834	22	2.5	22	88	5	76	27	14	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560244--560743	45	11.1	45	86	1	705	40	11	22	26	1.88
564414--564644	45	5.1	45	90	0	354	42	11	21	24	1.85
569233--569373	44	3.2	44	82	7	187	30	21	7	39	1.82
569462--569568	57	1.9	56	86	1	151	28	26	16	28	1.97
585424--585463	17	2.4	17	87	8	55	22	2	2	72	1.09
586160--586265	39	2.7	39	88	0	158	33	26	26	14	1.94
586083--586278	39	5.0	39	78	4	146	31	22	26	18	1.97
592877--593052	39	4.5	39	85	4	185	32	25	26	16	1.96
592895--593045	78	1.9	77	86	2	205	32	25	25	16	1.96
598992--599144	75	2.0	76	82	10	186	33	14	22	30	1.93
599897--600099	89	2.3	88	87	5	284	30	24	22	22	1.99
604747--607890	261	12.1	261	86	2	4265	30	18	19	31	1.95
604747--712182	783	139.4	779	82	8	100860	30	17	19	32	1.95
606436--607890	521	2.8	518	89	2	2171	30	17	19	32	1.95
607860--610358	261	9.6	261	87	1	3425	30	17	19	32	1.95
610237--610476	119	2.0	118	87	0	345	32	16	20	31	1.94
609976--610737	380	2.0	379	87	1	1107	31	17	19	32	1.94
610658--610940	152	1.9	152	92	1	478	35	14	17	31	1.91
610379--611197	413	2.0	413	88	0	1235	32	16	18	32	1.93
610792--612933	261	8.2	260	85	2	2815	31	16	18	32	1.94
610792--627294	522	31.3	521	84	6	18390	30	17	19	32	1.95
612836--613043	111	1.9	111	88	0	317	32	18	17	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612583--613306	373	1.9	372	83	1	932	30	17	18	32	1.95
612933--693461	261	310.3	261	79	10	50813	30	17	20	32	1.95
612300--613567	634	2.0	633	85	1	1700	30	17	18	32	1.94
612933--627294	521	27.4	521	81	8	8584	30	17	20	32	1.95
615640--615753	51	2.2	51	92	0	183	33	14	20	31	1.93
618028--618141	51	2.2	51	90	0	174	32	15	20	31	1.94
620868--620913	20	2.2	20	80	3	56	34	19	19	26	1.96
627112--627519	225	1.8	226	95	0	737	31	17	19	32	1.95
627327--649344	253	86.9	257	94	4	37662	29	18	20	31	1.96
628029--628106	41	1.9	40	82	10	95	24	20	21	33	1.97
632088--632187	41	2.4	41	78	8	114	24	23	22	31	1.99
638415--638504	41	2.2	40	82	7	110	24	23	23	28	1.99
638663--638763	41	2.5	40	76	10	114	24	22	21	30	1.99
639177--639277	41	2.5	41	77	9	116	23	23	21	30	1.99
640187--640286	41	2.4	41	78	8	114	24	23	22	31	1.99
641198--641297	41	2.4	41	78	8	114	24	23	22	31	1.99
641701--641800	41	2.4	41	78	8	114	24	23	22	31	1.99
642208--642302	41	2.3	40	77	12	104	24	21	23	31	1.98
642461--642559	41	2.4	41	77	9	105	24	23	21	31	1.98
643231--643309	40	2.0	39	82	9	97	26	21	20	31	1.98
644223--644322	41	2.4	41	78	8	114	24	23	22	31	1.99
644478--644569	39	2.4	39	74	9	98	22	25	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644717--644816	41	2.4	41	78	8	114	24	23	22	31	1.99
644969--645067	41	2.4	41	77	9	105	24	23	21	31	1.98
647274--647352	40	2.0	40	82	5	97	27	20	18	32	1.96
647516--647615	41	2.4	41	77	11	107	25	22	22	31	1.98
647784--647870	40	2.2	39	81	8	104	25	24	20	29	1.99
649148--649547	204	2.0	202	90	7	639	30	16	19	33	1.94
650800--650889	40	2.3	39	81	11	103	24	23	21	31	1.98
651054--651110	20	2.7	22	73	13	57	24	19	19	36	1.94
654365--654460	42	2.3	41	87	5	131	22	22	20	33	1.97
655144--655239	42	2.3	41	85	5	122	22	21	20	34	1.97
659464--659540	39	2.0	38	82	10	93	27	19	20	32	1.97
661982--662060	40	2.0	39	82	9	97	26	21	20	31	1.98
662827--663228	198	2.0	199	86	3	569	32	14	19	33	1.92
665440--665539	41	2.4	41	76	14	107	24	24	22	30	1.99
667481--667562	42	2.0	42	90	4	130	25	20	19	34	1.96
670353--670795	223	2.0	223	93	0	753	32	16	20	30	1.95
670887--671323	225	1.9	225	83	4	569	33	15	18	32	1.92
671800--671910	41	2.7	42	73	10	102	25	24	19	30	1.98
671097--672895	780	2.3	782	85	2	2517	30	17	20	32	1.95
671097--672869	519	3.4	518	85	3	2391	30	17	20	32	1.95
672633--673090	219	2.1	218	88	2	706	31	15	21	31	1.95
674848--674947	41	2.5	40	78	6	112	24	23	22	31	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
680483--680589	41	2.6	41	80	8	110	25	26	18	29	1.98
684372--684825	220	2.1	219	89	3	700	29	17	19	33	1.95
691980--692048	36	1.9	36	90	0	111	17	15	24	42	1.88
693461--698265	261	18.5	261	86	2	6408	30	18	19	31	1.96
693461--698265	523	9.3	521	88	2	6491	30	18	19	31	1.96
698022--698473	214	2.1	217	88	5	675	30	17	20	31	1.95
698230--699789	261	6.0	261	84	2	1982	30	17	19	31	1.95
699573--700014	221	2.0	221	89	0	679	29	16	20	34	1.94
699794--709531	261	37.4	261	88	1	13692	30	17	19	32	1.95
699794--709531	523	18.7	522	88	1	13712	30	17	19	32	1.95
709299--709756	233	2.0	233	92	1	767	28	18	19	34	1.95
709532--712166	261	10.2	260	88	2	3532	29	18	19	32	1.96
710362--710470	42	2.6	42	77	9	98	24	25	18	31	1.98
709535--712166	523	5.1	521	86	3	3509	29	18	19	32	1.96
711651--711752	41	2.5	42	80	4	118	28	21	18	31	1.97
712018--712360	178	1.9	178	88	2	519	31	15	20	32	1.94
711737--712620	438	2.0	431	90	1	1363	29	17	21	31	1.96
711491--712880	698	2.0	693	90	1	2158	30	17	20	31	1.96
712180--712969	260	3.0	258	87	2	1125	29	17	20	32	1.96
713206--713935	366	2.0	367	98	1	1412	35	19	17	27	1.94
723834--723886	25	2.1	25	82	6	63	33	1	3	60	1.26
725587--725706	42	2.9	43	81	8	140	25	32	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726482--726734	8	32.6	8	87	3	288	12	9	39	37	1.76
726647--726713	20	3.6	18	86	9	84	5	8	46	38	1.60
726979--727032	22	2.6	20	80	11	63	27	25	14	31	1.95
726882--727106	95	2.4	94	83	3	272	26	22	15	35	1.94
727901--727955	21	2.6	21	79	0	65	23	32	29	14	1.94
728678--728718	21	2.0	21	95	0	73	53	0	0	46	1.00
728811--729472	139	4.8	138	87	4	892	33	20	20	25	1.97
731972--732024	17	3.1	17	78	5	63	37	15	7	39	1.75
733256--733314	30	2.0	30	96	0	109	27	32	0	40	1.56
734680--734709	14	2.1	14	93	0	51	43	30	0	26	1.55

Tables:   1   2   3   4   5   6   7   8