genome.fa.s7761.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007761.1 Hibiscus syriacus cultivar Beakdansim tig00110030_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1497221

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 824 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310541--310609	36	1.9	36	93	0	120	40	11	20	27	1.87
310731--310767	18	2.1	18	85	14	51	45	5	13	35	1.66
312783--312829	9	5.2	9	80	14	53	72	2	10	14	1.21
312783--312830	17	2.7	17	78	18	53	70	2	10	16	1.24
313715--313749	2	17.5	2	100	0	70	51	0	0	48	1.00
316845--317051	103	2.0	103	88	3	310	27	27	19	25	1.99
318666--318707	21	2.0	21	90	0	66	23	9	28	38	1.86
324235--324318	39	2.2	39	86	0	114	19	28	20	32	1.96
324307--324395	38	2.3	38	82	3	108	24	26	16	31	1.97
325281--325320	21	2.0	20	90	5	62	50	2	5	42	1.37
325282--325333	21	2.5	20	84	6	59	53	3	3	38	1.37
326351--326377	6	4.5	6	100	0	54	62	0	0	37	0.95
329281--329323	21	2.1	20	86	4	59	23	11	16	48	1.78
342860--342898	8	4.9	8	81	12	53	33	0	0	66	0.92
343153--343213	13	4.8	13	78	11	72	72	0	0	27	0.85
343149--343201	22	2.5	22	87	3	72	75	0	0	24	0.80
350231--350267	18	2.0	19	89	5	58	13	5	13	67	1.39
351292--351362	21	3.4	21	90	3	108	45	21	18	15	1.86
355855--355880	13	2.0	13	100	0	52	38	30	7	23	1.83
358264--358820	208	2.6	211	91	3	876	32	16	19	31	1.94
358987--359069	37	2.2	38	89	2	123	38	18	18	25	1.92
359019--359213	81	2.4	80	87	1	266	36	22	17	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359183--359256	38	2.0	37	91	2	121	43	17	14	24	1.87
363189--363252	23	2.8	23	87	0	83	26	15	17	40	1.89
364357--364408	24	2.2	24	82	0	59	50	17	11	21	1.77
364377--364495	24	5.0	24	86	6	152	40	19	15	25	1.90
364386--364525	72	1.9	72	81	5	167	42	17	12	26	1.86
367015--367050	13	2.8	13	95	0	63	19	25	38	16	1.92
369161--369276	24	4.8	24	83	6	137	40	20	16	22	1.91
371791--371844	13	4.2	13	82	0	72	22	22	40	14	1.90
373945--374060	24	4.8	24	83	6	137	40	20	16	22	1.91
373978--374083	48	2.2	48	83	5	135	44	18	14	22	1.86
376533--376594	8	7.5	8	80	10	56	25	25	32	16	1.96
385280--385603	45	7.2	45	88	1	452	22	21	12	43	1.86
389103--389154	24	2.2	24	82	0	59	30	19	21	28	1.97
390430--390482	23	2.2	24	86	3	72	9	16	9	64	1.49
397985--398266	45	6.3	45	91	2	442	21	21	12	44	1.85
397985--398261	134	2.1	136	93	1	468	22	22	11	44	1.85
397985--398265	89	3.1	87	91	5	445	22	21	12	44	1.85
400665--400970	44	7.0	44	87	1	393	26	21	12	40	1.88
405820--405848	2	14.5	2	100	0	58	48	0	0	51	1.00
406426--406872	44	10.2	44	82	0	482	27	21	10	40	1.86
406455--407331	132	6.5	131	73	11	656	25	21	10	41	1.86
406843--406897	25	2.2	25	96	0	101	21	20	16	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406813--406941	69	1.9	69	90	3	206	24	20	13	42	1.87
406760--406985	113	2.0	113	86	1	319	25	20	11	42	1.86
406868--407331	44	10.5	44	89	0	680	24	22	11	41	1.87
406843--406987	25	6.3	24	69	18	94	23	21	12	42	1.86
406720--407205	176	3.0	157	78	9	398	25	21	11	41	1.86
407132--407249	20	5.2	25	63	22	80	22	25	12	39	1.89
410972--410997	3	8.7	3	100	0	52	34	0	30	34	1.58
410969--411007	9	4.3	9	90	0	51	43	0	25	30	1.55
412695--412828	57	2.4	57	97	0	259	24	32	12	29	1.92
412963--412993	10	3.1	10	100	0	62	58	9	0	32	1.31
414243--414277	15	2.5	13	90	9	52	74	0	2	22	0.95
415640--415704	29	2.3	29	81	5	71	18	6	3	72	1.19
421046--421906	288	3.0	288	87	2	1221	34	10	17	37	1.84
422096--422185	46	2.0	46	97	0	171	43	10	16	30	1.81
422761--422822	25	2.5	25	91	0	97	27	14	12	45	1.82
424189--424248	23	2.6	23	83	0	84	36	18	25	20	1.94
429342--429450	48	2.3	48	81	0	128	22	15	24	37	1.93
431149--431233	11	7.2	11	72	22	66	31	35	3	29	1.75
431146--431250	36	2.9	36	88	1	158	30	35	4	29	1.78
431684--431730	14	3.1	15	75	12	51	72	6	19	2	1.17
433878--433919	21	2.0	21	81	9	50	35	11	4	47	1.61
435255--435315	13	5.0	12	75	18	56	31	32	4	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435233--435334	36	2.9	35	91	4	161	31	34	4	29	1.79
435767--435813	14	3.1	15	75	12	51	72	6	19	2	1.17
439310--439414	36	2.9	36	92	1	176	29	36	5	28	1.80
439313--439395	13	6.8	13	69	21	56	30	36	4	28	1.78
444600--444724	48	2.6	48	87	0	160	26	12	24	36	1.90
446667--447078	228	1.8	217	85	6	565	29	11	16	41	1.84
448115--448295	60	3.0	58	79	4	191	35	22	4	37	1.76
452063--452103	21	2.0	21	95	0	73	21	26	19	31	1.97
452151--452180	15	2.0	15	93	0	51	23	20	36	20	1.95
452339--452396	30	2.0	29	90	10	91	44	17	5	32	1.70
452339--452398	29	2.0	30	93	6	104	43	16	6	33	1.74
453618--453663	20	2.4	19	85	7	58	30	13	6	50	1.66
454918--454947	15	2.0	15	100	0	60	20	20	40	20	1.92
460263--460301	19	1.9	19	85	10	51	28	5	28	38	1.78
461132--461159	12	2.3	12	100	0	56	53	25	7	14	1.66
461901--461933	2	17.0	2	93	6	59	51	0	0	48	1.00
462032--462072	19	2.1	20	86	4	57	51	4	12	31	1.60
474242--474550	46	6.7	46	85	0	411	22	24	11	40	1.88
474221--474550	92	3.6	92	84	2	457	23	24	11	40	1.88
474419--474563	26	6.0	26	69	18	125	21	21	14	42	1.88
481358--481718	46	7.7	46	74	13	263	23	21	11	43	1.85
481495--481539	20	2.2	20	96	0	81	22	31	11	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481352--481744	26	16.5	26	71	16	214	23	21	11	43	1.85
481352--481770	72	5.9	71	73	13	235	23	21	11	43	1.85
481352--481781	118	3.7	118	79	10	457	23	21	12	43	1.86
485659--485747	19	4.7	19	71	10	67	69	12	10	7	1.36
485664--485747	38	2.2	38	93	2	143	69	11	10	8	1.38
492507--492593	37	2.4	37	92	0	138	31	11	27	29	1.92
496799--496836	19	2.0	20	89	5	60	21	15	10	52	1.72
500566--500748	36	5.1	36	85	2	233	38	16	20	24	1.92
500752--501300	55	10.0	56	82	5	595	31	18	20	30	1.96
500752--501300	165	3.3	164	85	3	726	31	18	20	30	1.96
503255--503290	18	1.9	19	88	5	56	25	0	16	58	1.38
505804--505925	49	2.6	45	77	11	127	40	7	19	31	1.79
507591--507661	36	2.0	36	100	0	142	36	2	14	46	1.59
509066--509115	17	2.9	17	84	3	64	44	6	12	38	1.66
514739--514809	17	4.2	17	80	3	72	45	7	11	36	1.67
515340--515389	17	2.9	17	84	3	64	44	6	10	40	1.63
516414--516482	33	2.1	33	84	10	88	20	24	5	49	1.71
517302--517349	22	2.2	22	96	0	87	72	0	2	25	0.95
517990--518131	76	1.9	77	85	2	198	61	11	3	23	1.45
519970--520009	14	2.8	14	88	3	53	80	2	5	12	0.98
519971--520014	14	3.1	14	86	3	52	79	2	2	15	0.93
519971--520008	19	2.0	20	84	5	51	81	2	2	13	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524126--524159	15	2.3	15	100	0	68	5	26	23	44	1.76
525802--525839	17	2.2	19	86	13	55	68	0	2	28	1.03
525802--525839	18	2.1	18	85	9	51	68	0	2	28	1.03
525807--525859	16	3.3	17	80	17	60	62	0	1	35	1.06
526576--526745	76	2.2	76	82	4	200	58	10	3	27	1.47
530374--530475	17	5.9	17	71	15	66	41	8	12	37	1.75
534220--534667	54	8.3	54	85	0	556	31	18	17	33	1.94
534222--534720	108	4.6	108	84	1	550	31	18	16	33	1.93
538270--538309	15	2.7	15	88	0	53	5	22	22	50	1.68
541108--541156	20	2.4	21	79	3	55	48	14	12	24	1.77

Tables:   1   2   3   4   5   6   7