genome.fa.s7761.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007761.1 Hibiscus syriacus cultivar Beakdansim tig00110030_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1497221

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 824 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545232--545284	24	2.3	22	75	15	54	52	9	5	32	1.57
549076--549121	16	2.9	16	87	9	60	56	0	2	41	1.11
549081--549121	15	2.7	16	88	7	59	56	0	0	43	0.99
549505--549965	237	2.0	237	96	1	858	41	8	14	36	1.76
551107--551145	14	2.8	14	84	0	51	41	20	17	20	1.91
552378--552422	20	2.2	21	88	4	65	17	4	22	55	1.60
552444--552608	44	3.7	45	86	5	228	36	9	24	29	1.86
553003--553037	12	2.9	12	91	0	52	34	14	14	37	1.86
561677--561716	17	2.4	17	86	0	53	15	12	42	30	1.83
561784--561828	15	3.3	14	82	17	67	77	2	0	20	0.87
561788--561827	6	6.2	6	83	16	53	80	2	0	17	0.83
562259--562786	113	4.7	113	93	1	846	26	19	16	37	1.92
563223--563277	22	2.5	22	90	0	92	40	14	9	36	1.78
565724--565947	115	2.0	114	92	0	376	30	20	16	33	1.94
570161--570216	27	2.1	27	89	0	85	60	7	12	19	1.55
570190--570217	12	2.3	12	100	0	56	53	7	14	25	1.66
570276--570317	7	6.0	7	78	10	50	54	14	16	14	1.71
572731--572790	25	2.4	25	78	10	61	60	5	3	31	1.35
574237--574281	12	3.3	14	82	17	67	75	2	0	22	0.91
574226--574279	27	2.0	28	89	10	85	74	1	0	24	0.92
574222--574278	12	4.8	12	77	10	55	73	1	0	24	0.92
577765--577808	21	2.2	19	84	8	52	34	13	18	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578899--578933	18	1.9	18	100	0	70	17	51	20	11	1.75
581346--581436	23	3.9	23	84	7	112	25	16	19	38	1.92
581514--581588	35	2.1	35	90	0	114	12	25	28	34	1.91
583625--583669	15	3.1	15	87	6	67	13	37	26	22	1.91
583639--583685	10	5.5	8	82	14	51	14	34	25	25	1.94
584982--585086	51	2.1	51	98	0	201	53	0	20	26	1.46
586191--586281	47	1.9	48	84	2	121	26	16	18	38	1.92
586191--586284	24	4.0	24	84	2	109	25	15	19	39	1.91
586360--586432	33	2.1	35	90	5	114	10	30	26	32	1.90
587244--587531	44	6.5	44	88	0	405	41	11	21	25	1.86
593258--593761	266	1.9	265	86	4	712	41	10	21	26	1.85
593258--593786	44	12.0	44	84	1	655	40	10	21	27	1.86
596507--596770	138	1.9	138	82	3	334	29	13	17	40	1.87
597933--597972	17	2.4	17	87	8	55	20	27	22	30	1.98
606584--606610	9	3.0	9	100	0	54	33	0	0	66	0.92
609542--609704	91	1.8	88	92	4	272	25	19	14	39	1.90
609744--609797	17	3.1	17	70	15	56	24	18	11	46	1.81
609747--609804	19	3.2	18	66	24	50	18	22	8	50	1.74
609867--610043	91	1.9	92	93	1	302	23	23	14	38	1.92
610526--610668	76	1.9	76	83	2	189	38	13	19	28	1.89
610656--610827	66	2.7	65	78	8	172	41	14	16	27	1.88
610769--611053	36	7.8	36	89	1	408	38	13	21	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610932--610996	21	3.4	21	68	24	70	36	12	26	24	1.91
611028--611078	26	2.0	26	88	0	75	37	15	27	19	1.92
611072--611351	40	7.0	40	90	0	416	43	10	15	31	1.80
611651--611770	34	3.5	34	88	0	168	35	11	20	32	1.89
611875--612008	32	4.2	32	91	1	205	29	24	15	29	1.96
611875--612008	65	2.1	64	90	1	205	29	24	15	29	1.96
613049--613199	7	24.0	6	76	17	98	3	17	2	76	1.04
613063--613198	58	2.3	58	77	14	147	2	17	2	76	1.04
613061--613206	12	10.7	14	66	19	53	3	16	2	77	1.02
613142--613206	21	3.1	21	86	6	71	1	20	1	76	0.94
614369--614469	27	3.7	27	97	0	184	50	11	19	17	1.77
614396--614550	67	2.3	67	93	3	258	49	13	21	16	1.79
614456--614559	27	3.8	27	97	1	190	49	14	21	15	1.80
614365--614550	54	3.5	54	84	12	201	48	13	20	16	1.80
614365--614559	94	2.1	94	93	0	329	49	13	20	16	1.79
614363--614559	20	9.8	20	73	14	115	49	13	20	16	1.79
617276--617425	55	2.7	53	78	8	149	22	21	12	44	1.85
619170--619230	29	2.2	28	82	11	72	59	13	8	19	1.59
622945--623002	30	1.9	30	85	0	80	67	10	5	17	1.38
626145--626203	21	2.8	21	84	0	82	16	32	3	47	1.64
627230--627327	50	2.0	50	81	0	115	31	21	16	30	1.95
627586--627620	14	2.5	14	100	0	70	40	0	5	54	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627845--627913	30	2.3	31	80	12	81	49	0	2	47	1.16
635612--635709	30	3.2	30	78	7	83	43	4	8	43	1.53
636301--636472	86	2.0	86	94	0	299	29	22	22	26	1.99
638845--638903	29	2.0	29	96	0	109	25	11	13	49	1.76
641724--641851	43	3.0	42	85	4	166	20	3	23	53	1.60
641991--642034	21	2.2	20	91	4	70	34	22	29	13	1.93
642339--642388	25	2.0	25	100	0	100	40	8	28	24	1.83
644389--644424	17	2.1	17	100	0	72	55	5	11	27	1.57
649054--649166	56	2.0	57	98	1	219	23	21	22	33	1.97
651179--651220	19	2.2	19	100	0	84	33	11	9	45	1.73
651227--651263	18	2.1	18	89	0	56	51	10	2	35	1.51
651454--651487	17	2.0	17	88	0	50	44	14	0	41	1.45
653621--653670	26	1.9	27	84	8	68	4	24	0	72	1.02
659749--659828	30	2.7	30	96	1	144	35	7	16	41	1.76
660040--660081	21	2.0	21	95	0	75	23	21	28	26	1.99
661293--661340	19	2.5	20	82	3	62	52	6	12	29	1.63
662600--662679	30	2.7	30	92	1	135	35	6	16	42	1.73
662892--662931	21	1.9	21	89	0	62	22	15	30	32	1.94
668914--668950	18	2.1	18	89	0	56	62	0	0	37	0.96
671528--671635	40	2.7	40	86	2	155	27	15	25	31	1.96
684365--684401	19	2.0	19	89	5	58	45	21	8	24	1.78
714121--714150	3	10.0	3	100	0	60	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
719105--719158	24	2.2	26	86	6	76	37	1	1	59	1.19
723035--723061	4	6.8	4	100	0	54	22	0	0	77	0.76
723392--723423	16	2.0	16	93	0	55	12	9	18	59	1.59
725788--725821	15	2.3	15	90	10	52	50	2	2	44	1.32
727929--728000	17	4.3	17	76	1	56	43	13	5	37	1.68
728393--728444	25	2.1	25	92	0	86	32	23	19	25	1.97
728765--728790	13	2.0	13	100	0	52	30	23	7	38	1.83
734624--734682	20	3.0	20	97	0	109	32	44	3	20	1.68
735916--736114	99	2.0	99	86	1	274	40	10	6	43	1.64
736311--736451	38	3.8	36	81	6	165	46	5	9	39	1.60
736411--736484	22	3.2	21	74	22	60	44	2	6	45	1.44
736468--736561	2	51.0	2	72	23	64	40	1	5	53	1.31
736468--736561	7	12.6	7	74	21	68	40	1	5	53	1.31
736468--736563	5	18.2	5	74	17	63	40	1	5	53	1.30
736468--736593	39	3.3	37	78	16	116	38	1	7	53	1.38
736694--736727	13	2.6	13	90	0	59	38	47	14	0	1.45
745647--745683	14	2.5	15	87	12	51	59	13	13	13	1.62
746597--746646	14	3.7	13	81	2	55	36	6	12	46	1.66
746593--746646	28	2.0	27	92	3	90	37	5	12	44	1.66
746621--746775	38	4.1	38	84	2	204	45	5	8	40	1.58
746621--746773	75	2.0	75	90	5	238	45	5	8	40	1.59
746761--747282	8	59.0	10	69	25	290	41	0	1	56	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
746714--746821	38	2.8	38	82	8	105	50	2	3	43	1.34
746761--746820	18	3.4	19	84	15	69	50	0	0	50	1.00
746761--747282	17	29.5	20	70	23	290	41	0	1	56	1.12
746686--746948	125	2.1	123	83	10	318	44	3	5	46	1.41
746895--747294	5	80.8	5	90	8	635	39	0	0	60	0.97
748496--748543	21	2.3	21	77	0	51	31	18	0	50	1.48
748836--748871	2	18.0	2	88	0	54	44	0	5	50	1.25
752373--752436	31	2.1	31	90	0	101	31	20	26	21	1.98
755160--755269	37	2.9	39	82	14	149	46	4	8	40	1.54
755295--755332	14	2.8	14	88	4	51	34	2	10	52	1.50

Tables:   1   2   3   4   5   6   7