genome.fa.s7761.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007761.1 Hibiscus syriacus cultivar Beakdansim tig00110030_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1497221

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 824 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
962606--962869	138	1.9	138	88	0	393	42	13	18	26	1.86
962694--962951	101	2.5	102	86	2	331	41	12	17	28	1.86
962836--963018	66	2.8	66	94	0	305	35	10	20	33	1.87
962958--963032	37	2.0	38	84	2	98	34	13	21	30	1.92
964704--964765	13	5.0	12	81	18	74	1	16	3	79	0.95
964703--964763	25	2.4	27	89	10	94	3	16	3	77	1.04
966708--966748	16	2.4	18	80	19	52	70	2	14	12	1.26
967832--967896	25	2.6	25	79	16	80	75	4	6	13	1.15
968167--968193	2	13.5	2	100	0	54	51	0	0	48	1.00
968257--968304	2	25.0	2	85	8	64	52	2	2	43	1.24
968274--968338	22	3.0	22	82	8	62	63	0	4	32	1.15
968268--968328	22	2.9	21	81	11	63	62	0	1	36	1.05
972025--972057	2	16.5	2	100	0	66	51	0	0	48	1.00
972527--972604	39	2.0	39	100	0	156	23	20	30	25	1.98
972530--972595	18	3.5	18	81	18	89	21	19	31	27	1.97
972858--972911	18	3.0	18	77	0	72	40	3	22	33	1.71
972858--972932	36	2.1	36	90	5	116	37	2	24	36	1.69
977811--977845	18	1.9	18	88	0	52	22	20	34	22	1.97
978088--978155	18	3.8	18	80	0	82	41	4	20	33	1.72
978090--978168	36	2.2	36	88	4	115	37	2	21	37	1.67
980752--980831	35	2.3	35	88	0	124	45	12	3	38	1.60
981885--981917	14	2.5	13	86	13	50	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
987531--987651	27	4.6	27	76	8	106	63	2	14	19	1.41
987561--987659	26	3.8	25	75	10	74	65	2	13	19	1.35
998647--998686	18	2.2	19	86	8	57	10	17	0	72	1.11
1000190--1000258	35	2.0	35	88	0	102	46	10	4	39	1.58
1000350--1000374	10	2.5	10	100	0	50	20	8	20	52	1.71
1001689--1002182	55	9.0	55	87	1	643	34	11	19	34	1.88
1001689--1002178	165	3.0	165	88	2	709	34	11	19	34	1.88
1004748--1004786	21	1.9	21	84	5	53	38	17	15	28	1.91
1007273--1007335	23	2.7	23	95	0	117	34	23	23	17	1.96
1007985--1008029	19	2.4	18	81	3	54	44	11	0	44	1.39
1008549--1008608	31	1.9	31	93	0	102	40	6	10	43	1.64
1009078--1009189	28	4.3	28	80	16	134	55	1	0	42	1.10
1009098--1009169	14	5.5	14	67	21	57	54	1	0	44	1.08
1009093--1009140	23	2.3	20	77	19	53	54	0	0	45	0.99
1009078--1009189	51	2.2	52	96	3	208	55	1	0	42	1.10
1009103--1009198	24	3.9	24	81	12	122	54	1	0	44	1.07
1009182--1009230	6	8.5	6	78	13	50	67	2	0	30	1.02
1009182--1009237	17	3.2	17	80	10	69	67	1	0	30	1.01
1009078--1009208	28	5.1	25	75	14	97	57	1	0	41	1.08
1009158--1009237	11	7.4	11	69	17	51	62	1	0	36	1.03
1013426--1013489	23	2.8	23	80	0	83	37	26	21	14	1.92
1027556--1027594	21	1.9	20	89	5	60	38	20	12	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1030041--1030266	112	2.0	112	92	0	380	32	21	15	30	1.95
1035076--1035116	19	2.2	19	95	0	73	19	19	17	43	1.88
1042458--1042936	43	11.0	43	86	2	611	18	22	22	35	1.96
1042458--1042936	87	5.5	86	85	4	599	18	22	22	35	1.96
1044039--1044176	45	3.0	45	90	3	206	23	12	18	45	1.83
1044271--1044319	20	2.5	20	89	0	71	30	18	20	30	1.96
1044537--1044657	13	8.9	14	68	21	62	38	9	1	51	1.44
1044547--1044634	22	4.0	22	74	18	76	37	10	1	51	1.44
1044595--1044640	24	2.0	24	91	4	76	39	6	0	54	1.26
1048761--1048986	122	1.9	121	79	9	262	32	23	6	37	1.80
1049668--1049753	25	3.1	27	73	11	77	52	4	2	40	1.35
1049723--1050098	186	2.0	186	92	1	619	41	3	9	45	1.55
1050124--1050176	27	2.0	27	96	0	97	37	20	15	26	1.92
1053107--1053141	2	17.5	2	100	0	70	48	0	0	51	1.00
1053130--1053206	24	3.2	23	73	17	59	55	1	1	41	1.16
1059236--1059290	23	2.3	23	80	17	60	40	5	14	40	1.69
1062057--1062115	23	2.6	23	86	2	84	6	15	3	74	1.16
1062456--1062497	22	1.9	22	85	0	57	21	2	42	33	1.66
1064561--1064598	20	2.0	19	90	10	60	31	15	28	23	1.96
1065338--1065380	23	1.9	23	85	4	61	25	18	25	30	1.98
1073312--1073354	21	2.1	20	82	4	50	62	18	6	11	1.50
1074983--1075030	24	2.0	24	100	0	96	25	33	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1075753--1075790	20	2.0	19	90	10	60	50	10	21	18	1.76
1075752--1075796	20	2.6	16	80	19	54	46	11	20	22	1.81
1078440--1078469	12	2.5	12	100	0	60	33	10	26	30	1.89
1079737--1079771	18	1.9	18	94	0	61	34	0	14	51	1.42
1082365--1082413	24	2.0	24	96	0	89	32	14	12	40	1.83
1083091--1083176	42	2.0	42	97	0	163	38	6	12	41	1.70
1083092--1083159	22	3.2	22	62	29	56	36	5	13	44	1.68
1086277--1086478	57	3.5	57	88	2	291	36	11	18	33	1.87
1086279--1086511	114	2.0	113	82	6	283	35	12	19	32	1.89
1088541--1088587	23	2.0	23	91	0	76	21	25	34	19	1.96
1088810--1088892	37	2.2	37	93	0	139	19	16	22	40	1.91
1096992--1097055	23	2.8	23	78	0	83	32	25	26	15	1.95
1104473--1104540	34	2.0	34	85	5	93	25	23	23	27	2.00
1108463--1108503	2	20.5	2	94	0	73	46	0	2	51	1.14
1108585--1108614	2	15.0	2	100	0	60	50	0	0	50	1.00
1113835--1114044	30	6.8	30	73	13	165	48	6	20	24	1.73
1113850--1114005	33	4.9	33	70	21	102	50	7	19	23	1.72
1113942--1114010	31	2.4	27	76	19	70	50	5	20	23	1.69
1113803--1114053	30	8.0	30	70	14	150	49	7	19	23	1.73
1117929--1117984	29	1.9	29	81	0	67	46	8	16	28	1.77
1119177--1119444	30	8.7	30	78	8	229	48	6	19	25	1.72
1119177--1119466	64	4.7	61	72	10	221	47	6	20	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1119266--1119446	94	2.0	91	83	7	215	48	6	19	25	1.72
1121652--1121745	30	3.2	28	62	24	66	21	30	0	47	1.51
1130390--1130443	20	2.7	19	75	8	63	33	31	18	16	1.93
1130493--1130545	20	2.7	20	88	5	72	43	22	16	16	1.88
1130566--1130784	20	10.9	20	82	3	233	37	23	18	20	1.94
1130573--1130784	40	5.3	40	90	2	277	37	23	18	20	1.94
1131639--1131692	24	2.2	24	93	0	90	20	18	20	40	1.91
1134108--1134156	20	2.5	20	86	0	62	32	22	20	24	1.98
1134166--1134207	19	2.2	19	100	0	84	47	16	19	16	1.83
1134451--1134505	20	2.8	20	85	0	74	32	20	21	25	1.97
1133887--1134536	344	1.9	344	96	0	1201	32	17	16	34	1.92
1134488--1134572	33	2.5	33	88	1	116	44	17	22	15	1.86
1134581--1134725	19	7.8	19	84	9	192	14	20	17	46	1.83
1134827--1134863	14	2.6	14	86	0	56	48	21	0	29	1.50
1136177--1136366	20	9.4	20	81	4	211	21	17	24	36	1.94
1136177--1136366	40	4.7	40	87	1	245	21	17	24	36	1.94
1138740--1138816	38	2.0	38	92	5	129	31	14	18	36	1.90
1138993--1139109	60	2.0	60	87	0	171	34	23	11	31	1.90
1139321--1139442	60	2.1	59	85	1	163	34	15	18	31	1.92
1139691--1139776	35	2.5	35	84	0	100	40	20	1	37	1.61
1139745--1139787	21	2.0	21	100	0	86	46	13	0	39	1.44
1139908--1139940	17	1.9	17	88	11	50	27	3	6	63	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1140403--1140646	126	1.9	126	92	0	407	36	13	14	35	1.85
1141216--1141246	12	2.6	12	94	0	53	25	19	0	54	1.44
1146746--1146822	6	12.8	6	84	10	86	51	10	1	36	1.44
1146745--1146824	4	20.0	4	80	0	70	51	10	1	37	1.44
1147609--1147726	60	2.0	60	81	9	143	32	16	18	32	1.94
1150059--1150114	2	28.0	2	100	0	112	50	0	0	50	1.00
1151661--1151715	24	2.3	24	78	3	67	47	12	14	25	1.80
1154639--1154771	60	2.2	59	80	4	158	34	18	4	42	1.71
1154805--1154840	12	3.0	12	95	0	63	30	41	0	27	1.56
1158331--1158384	20	2.6	21	73	5	56	55	0	3	40	1.17

Tables:   1   2   3   4   5   6   7