genome.fa.s7838.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007838.1 Hibiscus syriacus cultivar Beakdansim tig00110187_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3429202

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1485 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3362965--3363073	19	5.7	19	89	5	157	27	30	24	17	1.97
3362967--3363073	9	11.1	10	75	11	107	28	30	23	17	1.97
3364774--3364810	2	18.5	2	100	0	74	48	0	0	51	1.00
3369227--3369273	25	1.9	24	86	4	67	34	2	42	21	1.65
3370255--3370297	18	2.4	18	76	0	50	23	41	2	32	1.67
3388542--3388582	17	2.4	17	83	0	55	24	19	29	26	1.98
3391622--3391662	16	2.6	16	88	3	57	36	12	21	29	1.90
3395338--3395364	2	13.5	2	100	0	54	48	0	0	51	1.00
3398808--3399176	20	18.5	20	85	4	458	34	26	18	20	1.96
3399848--3399894	24	2.0	24	87	8	69	25	14	21	38	1.92
3400069--3400093	13	1.9	13	100	0	50	76	0	24	0	0.80
3402398--3402685	19	16.4	19	77	18	304	46	18	20	14	1.83
3402451--3402505	14	3.6	14	73	21	56	45	20	23	10	1.82
3402398--3402666	33	7.8	33	82	10	260	46	18	20	14	1.83
3402465--3402707	33	6.9	35	80	14	181	46	17	20	15	1.84
3402392--3402685	53	5.6	55	79	15	254	47	18	20	14	1.83
3402714--3402815	19	5.6	19	85	12	151	14	23	17	44	1.86
3402922--3402958	14	2.6	14	91	0	65	45	21	0	32	1.52
3402939--3403009	37	1.9	37	97	0	133	52	16	1	29	1.53
3402939--3403018	37	2.2	37	90	0	124	53	17	1	27	1.51
3404880--3404936	14	3.7	14	77	20	60	45	22	21	10	1.82
3404861--3404953	33	2.8	33	95	0	168	47	21	20	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3404824--3404958	19	7.6	19	76	16	128	45	23	19	11	1.82
3404954--3405082	19	7.3	19	75	17	125	8	17	28	45	1.77
3404954--3405045	33	2.8	33	93	3	150	7	18	28	45	1.76
3405126--3405504	93	4.1	93	98	1	744	46	18	12	22	1.83
3407204--3407293	14	5.7	14	74	23	81	42	23	25	8	1.83
3407196--3407310	33	3.5	33	95	0	212	45	20	24	9	1.81
3407203--3407315	19	6.8	18	72	23	88	43	22	24	9	1.83
3407327--3407381	14	3.6	14	73	21	56	9	27	23	40	1.85
3407502--3407572	33	2.2	33	92	0	115	47	18	22	11	1.80
3407753--3407807	22	2.5	22	81	0	74	20	16	40	23	1.91
3407951--3408143	20	9.6	20	82	5	219	19	19	25	35	1.95
3407951--3408143	60	3.2	60	83	0	251	19	19	25	35	1.95
3408199--3408250	20	2.6	20	96	0	95	21	13	26	38	1.90
3410520--3410575	18	3.2	17	70	25	53	7	33	0	58	1.25
3423901--3423970	18	3.9	18	72	7	61	57	1	2	38	1.23
3423941--3423978	18	2.1	18	90	0	58	63	0	5	31	1.17
3424497--3424590	20	4.6	20	75	13	93	22	21	19	37	1.95
3424497--3424606	41	2.7	41	89	0	148	21	20	20	36	1.95
3425434--3425565	21	6.5	21	71	13	89	35	25	18	19	1.95
3425434--3425544	41	2.8	40	80	12	111	36	26	18	18	1.94
3425494--3425599	19	5.4	19	76	7	70	37	21	19	20	1.94
3425440--3425559	40	3.0	38	75	15	109	35	25	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3425600--3425646	21	2.2	21	96	0	85	21	19	31	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!