genome.fa.s7841.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007841.1 Hibiscus syriacus cultivar Beakdansim tig00110195_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1873963

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487654--487707	14	3.5	14	75	22	54	48	18	20	12	1.81
487664--487700	19	1.9	19	88	0	56	51	16	21	10	1.74
487635--487712	33	2.4	33	88	0	111	42	20	23	14	1.88
487731--487768	20	1.9	20	94	0	67	15	21	23	39	1.92
488820--488866	24	2.0	24	91	0	76	29	19	17	34	1.94
488820--488878	24	2.5	24	85	0	73	28	16	18	35	1.93
489053--489077	12	2.1	12	100	0	50	72	0	28	0	0.86
490244--490469	64	3.5	63	78	11	237	32	19	18	29	1.96
491143--491206	30	2.1	30	82	5	76	20	18	26	34	1.96
494396--494621	64	3.5	63	78	11	237	32	19	18	29	1.96
495295--495358	30	2.1	30	82	5	76	20	18	26	34	1.96
497918--498048	19	7.7	19	66	23	94	42	19	22	14	1.88
497918--498044	33	3.8	33	88	4	202	42	19	22	14	1.88
497919--498051	66	2.0	66	97	0	248	41	19	22	16	1.90
498044--498086	20	2.2	20	87	4	61	16	18	23	41	1.89
498227--498263	14	2.6	14	91	0	65	45	24	0	29	1.53
501583--501645	20	3.2	20	80	8	74	44	17	22	15	1.86
501581--501765	19	10.1	19	76	14	165	44	22	21	12	1.85
501581--501765	33	5.1	38	78	14	165	44	22	21	12	1.85
501761--501805	19	2.4	19	88	0	72	6	15	24	53	1.66
502354--502406	20	2.7	20	93	0	88	26	20	28	24	1.99
502375--502469	41	2.3	41	80	3	102	21	20	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502519--502559	21	2.0	21	85	0	55	34	31	17	17	1.93
502985--503031	15	3.1	15	72	22	53	63	2	0	34	1.06
503227--503286	3	20.0	3	96	0	111	66	1	0	31	1.01
503910--503979	26	2.8	24	81	12	79	48	0	12	38	1.42
504594--504627	17	2.0	17	100	0	68	35	0	5	58	1.22
504982--505011	10	3.0	10	95	0	51	3	46	0	50	1.18
511695--511746	26	2.0	26	92	0	86	44	15	15	25	1.85
518543--518576	16	2.1	16	94	0	59	32	8	26	32	1.87
519326--519358	15	2.1	16	88	5	50	51	15	24	9	1.72
531004--531055	3	17.7	3	96	4	97	0	30	0	69	0.89
549681--549736	28	2.0	28	96	0	103	51	17	8	21	1.72
554952--554987	18	2.0	18	100	0	72	27	11	22	38	1.88
567515--567563	26	1.9	25	87	4	71	59	2	4	34	1.28
568463--568489	13	2.1	13	100	0	54	55	0	0	44	0.99
568803--568836	13	2.6	13	95	0	59	32	0	32	35	1.58
569310--569343	2	17.0	2	100	0	68	50	0	0	50	1.00
571082--571127	3	15.3	3	90	0	74	65	2	0	32	1.05
571240--571286	21	2.4	19	80	19	53	21	10	0	68	1.20
571937--571963	3	9.0	3	100	0	54	66	0	0	33	0.92
572852--572889	20	1.9	20	84	10	51	55	0	5	39	1.23
579849--579874	3	8.7	3	100	0	52	65	0	34	0	0.93
591724--591877	51	3.0	50	85	6	195	49	9	21	20	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595210--595540	164	2.0	165	99	0	655	25	13	17	43	1.86
601379--601404	4	6.5	4	100	0	52	76	23	0	0	0.78
603881--603925	21	2.1	21	87	0	63	31	28	24	15	1.96
605607--605669	13	5.5	13	65	27	52	19	26	26	26	1.99
605603--605683	22	3.6	22	96	1	144	18	27	29	24	1.98
611367--611403	2	18.5	2	100	0	74	48	0	0	51	1.00
617329--617361	2	16.5	2	100	0	66	51	0	0	48	1.00
623020--623056	17	2.2	16	90	4	56	29	0	2	67	1.04
625262--625292	2	15.5	2	100	0	62	51	0	0	48	1.00
625356--625422	35	1.9	35	96	0	125	31	28	28	11	1.92
625356--625430	35	2.1	35	92	0	123	33	28	26	12	1.92
625508--625591	24	3.5	24	85	3	125	35	20	16	27	1.94
626749--626783	18	1.9	18	88	0	52	28	20	2	48	1.63
628098--628140	13	3.3	13	83	0	59	18	18	44	18	1.87
632338--632371	17	2.0	17	88	0	50	64	0	0	35	0.94
634847--634886	19	2.1	18	86	9	53	42	5	2	50	1.37
635850--636399	137	4.1	134	75	15	599	44	8	9	38	1.67
639878--639907	4	7.5	4	92	0	51	30	0	20	50	1.49
640671--640784	60	1.9	59	83	1	147	37	5	21	35	1.76
650480--650516	2	18.5	2	100	0	74	0	48	0	51	1.00
650516--650546	2	15.5	2	100	0	62	48	0	0	51	1.00
654600--654672	38	1.9	38	100	0	146	27	28	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
654936--655025	44	2.0	44	93	0	153	20	4	27	47	1.69
657762--657809	3	16.0	3	91	0	78	37	0	33	29	1.58
657762--657809	15	3.2	15	96	0	87	37	0	33	29	1.58
658126--658150	7	3.6	7	100	0	50	44	0	0	56	0.99
658257--658331	31	2.5	31	91	2	116	24	9	10	56	1.63
658281--658329	15	3.3	15	75	11	55	20	10	8	61	1.53
664227--664359	49	2.6	49	80	11	137	18	30	28	22	1.98
665376--665416	18	2.3	18	91	4	66	63	2	4	29	1.28
665631--665772	50	2.8	50	87	2	196	26	28	27	17	1.98
665631--665789	50	3.2	50	83	5	144	25	27	29	16	1.97
666927--666967	8	5.1	8	100	0	82	36	0	0	63	0.95
677100--677145	21	2.2	21	100	0	92	50	4	4	41	1.42
704008--704070	31	2.0	31	87	0	90	39	15	22	22	1.92
705794--705856	31	2.1	30	90	3	99	22	23	15	38	1.93
706744--706862	56	2.1	57	90	1	186	26	32	3	36	1.73
707272--707324	26	2.0	26	100	0	106	39	15	15	30	1.87
717429--717491	3	21.3	3	87	9	94	63	0	0	36	0.95
718814--718838	12	2.1	12	100	0	50	32	44	8	16	1.76
719806--719989	48	3.8	48	91	0	296	26	35	10	28	1.89
722855--722899	20	2.2	20	84	7	56	64	6	0	28	1.19
732329--732399	24	3.0	24	76	0	70	19	11	18	50	1.76
733214--733333	54	2.2	55	89	4	190	26	10	9	53	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
740830--740872	19	2.1	21	87	8	63	53	2	0	44	1.13
740828--740913	31	2.8	32	82	3	104	48	5	0	45	1.26
749058--749103	21	2.2	21	85	11	60	54	4	6	34	1.46
750999--751037	19	2.1	19	95	0	69	28	17	23	30	1.97
754394--755174	388	2.0	388	96	0	1445	34	21	18	25	1.96
764163--764502	171	2.0	172	87	0	493	48	17	15	18	1.81
773828--773859	11	3.1	11	82	17	50	46	0	0	53	1.00
789407--789460	17	3.2	17	100	0	108	27	11	29	31	1.91
794787--795011	121	1.9	121	83	1	299	29	20	16	33	1.95
795402--795467	32	2.1	32	100	0	132	36	12	6	45	1.66
797194--797234	21	2.0	21	100	0	82	24	24	26	24	2.00
802437--802470	2	17.0	2	100	0	68	50	0	0	50	1.00
804403--804572	42	4.1	41	68	18	102	30	17	17	34	1.94
804773--804801	14	2.1	14	100	0	58	20	27	13	37	1.91
807512--807931	43	9.9	42	83	5	445	25	24	17	32	1.97
807555--807931	85	4.4	85	83	5	442	25	24	18	31	1.97
814478--814818	168	2.0	169	98	1	666	34	8	14	43	1.76
822517--822578	25	2.5	25	87	7	92	35	12	9	41	1.76
824333--824419	27	3.1	29	82	12	94	48	0	2	49	1.13
824339--824419	28	3.0	26	77	15	83	49	0	1	49	1.08
824345--824422	37	2.1	39	83	9	99	47	0	1	51	1.09
830265--830316	6	8.7	6	87	8	79	55	0	44	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
830300--830333	9	3.6	9	88	11	50	70	0	29	0	0.87
837292--837339	26	2.0	24	84	12	62	70	4	20	4	1.21
839483--839669	45	4.2	45	89	4	252	20	32	16	30	1.95
840390--840510	42	2.9	42	80	4	136	23	18	19	38	1.93
849265--849329	30	2.2	30	97	0	121	30	3	44	21	1.67
855620--855827	42	5.2	42	83	9	272	52	18	4	24	1.63
855676--855834	76	2.1	76	89	1	237	52	18	4	25	1.64
859559--860088	287	1.8	288	85	4	757	29	19	16	34	1.93
866477--866530	23	2.5	21	72	27	58	70	16	1	11	1.25
873551--873792	60	4.1	60	82	5	262	31	23	5	38	1.79

Tables:   1   2   3   4   5   6   7