genome.fa.s7841.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007841.1 Hibiscus syriacus cultivar Beakdansim tig00110195_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1873963

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
873597--873754	31	5.2	30	66	17	94	31	25	5	37	1.78
873648--873737	29	3.0	29	68	17	85	33	26	4	35	1.77
873924--874088	60	2.7	60	78	4	154	41	4	20	33	1.74
874263--874310	12	3.5	13	80	13	53	60	0	2	37	1.09
874254--874312	26	2.2	27	75	3	66	55	0	1	42	1.09
874263--874310	15	3.5	14	77	13	55	60	0	2	37	1.09
876720--876770	26	2.1	24	82	10	59	58	7	9	23	1.56
877547--877597	26	2.0	26	84	7	68	47	0	13	39	1.43
881338--881378	20	2.0	20	85	0	55	56	14	12	17	1.68
881438--881489	21	2.5	22	73	17	56	23	1	11	63	1.37
885644--885730	35	2.5	35	92	1	140	44	26	0	28	1.54
887761--887789	2	14.5	2	100	0	58	51	0	48	0	1.00
893058--893092	3	11.7	3	100	0	70	68	0	0	31	0.90
895345--895376	15	2.2	14	94	5	55	31	6	0	62	1.20
909844--909877	14	2.4	14	90	0	50	55	0	2	41	1.15
911815--911968	75	2.1	74	88	3	229	24	19	12	43	1.85
916392--916419	14	2.0	14	100	0	56	50	14	21	14	1.78
916422--916536	42	2.7	42	97	0	212	17	19	19	44	1.87
916707--916772	22	3.0	21	84	10	71	48	0	0	51	1.00
916735--916780	10	4.5	10	78	21	51	41	0	0	58	0.98
916717--916778	22	2.8	22	85	9	74	45	0	0	54	0.99
916734--916811	30	2.5	32	78	18	83	46	1	0	52	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
916734--916811	35	2.6	28	77	20	77	46	1	0	52	1.08
916795--916895	28	3.6	28	77	16	84	45	0	1	51	1.19
917092--917140	19	2.5	20	93	3	82	32	16	8	42	1.77
917092--917149	19	3.0	19	87	2	53	32	17	6	43	1.75
917123--917203	15	5.5	15	82	5	94	37	19	6	37	1.77
917123--917188	29	2.3	29	94	5	116	34	18	7	39	1.79
917123--917208	44	2.0	43	88	2	127	34	19	5	39	1.76
917623--917737	42	2.7	42	98	0	221	16	19	20	44	1.87
917938--917983	10	4.5	10	78	21	51	41	0	0	58	0.98
917909--917971	23	2.6	25	78	19	71	50	0	0	49	1.00
917926--917987	21	3.0	23	84	13	73	45	0	0	54	0.99
918006--918101	30	3.2	31	81	11	94	45	1	2	51	1.20
918300--918349	20	2.5	20	100	0	100	34	16	10	40	1.81
918332--918414	15	5.6	15	86	2	114	36	20	7	36	1.80
918332--918414	30	2.8	30	92	1	132	36	20	7	36	1.80
923900--923938	2	19.5	2	100	0	78	51	0	0	48	1.00
932142--932449	154	2.0	154	100	0	616	36	22	12	27	1.91
935698--936358	198	3.3	198	85	3	855	40	13	14	31	1.85
936447--936575	23	5.9	22	70	12	68	35	11	7	44	1.70
936534--936580	23	2.0	23	87	0	67	34	17	8	40	1.79
936376--936606	87	2.7	85	84	4	306	33	12	9	44	1.75
939480--939595	62	1.9	62	94	3	209	34	18	24	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
940657--940707	12	4.3	12	76	14	52	27	0	0	72	0.85
941054--941217	76	2.1	77	97	2	312	39	21	21	17	1.92
942368--942978	304	2.0	305	96	2	1133	20	18	14	45	1.84
945458--945620	81	2.0	81	92	7	278	26	11	20	41	1.86
951671--951702	15	2.1	15	100	0	64	31	9	12	46	1.73
956941--957000	2	30.0	2	100	0	120	50	0	0	50	1.00
961332--961485	51	3.0	51	100	0	308	27	23	23	25	2.00
966725--966836	35	3.2	35	87	0	161	41	21	0	35	1.59
967516--967558	20	2.2	19	83	4	50	44	0	4	51	1.22
967882--967994	35	3.2	35	86	2	147	34	0	20	44	1.58
969044--969095	27	2.0	27	81	11	63	40	11	0	48	1.40
970559--970621	31	2.1	30	87	3	90	41	9	9	39	1.70
996113--996137	12	2.1	12	100	0	50	8	16	16	60	1.58
996434--996630	107	1.8	107	83	0	259	36	10	14	39	1.80
998256--1001106	48	59.6	47	73	7	1222	26	36	13	23	1.92
998342--998418	24	3.2	24	69	7	66	29	44	12	12	1.81
998256--1001106	96	29.8	96	75	8	1789	26	36	13	23	1.92
998359--998434	24	3.2	24	67	10	57	28	44	10	15	1.80
998611--998779	24	7.0	24	62	12	69	27	37	11	24	1.89
998923--998999	24	3.2	24	70	14	68	25	33	15	24	1.95
999087--999165	24	3.3	24	73	7	79	29	39	10	21	1.86
999269--999345	24	3.2	24	72	7	84	31	38	9	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
999124--999371	135	1.8	135	85	1	345	26	35	14	24	1.93
999358--999433	24	3.2	24	61	0	62	26	38	11	23	1.89
999460--999541	24	3.4	24	70	12	69	24	36	9	29	1.87
1000193--1000471	135	2.1	134	84	5	357	27	36	11	23	1.90
1000417--1000494	24	3.2	24	71	7	77	29	38	8	23	1.85
1001018--1001091	24	3.1	24	66	14	62	31	33	14	20	1.93
1000369--1001261	96	9.2	95	74	8	520	26	37	13	22	1.92
1000889--1001154	144	1.8	144	80	4	322	27	38	14	19	1.91
1001130--1001264	48	2.8	48	79	0	126	27	37	15	20	1.92
1004550--1004702	72	2.1	72	87	0	225	22	38	20	18	1.93
1004694--1004752	30	2.0	30	89	0	91	27	44	10	18	1.82
1006002--1006051	23	2.2	23	96	0	91	42	4	42	12	1.60
1012819--1012859	20	2.0	21	85	4	57	46	0	7	46	1.30
1025123--1025176	28	1.9	28	96	0	99	40	29	16	12	1.86
1026147--1026214	22	3.0	22	97	2	127	26	27	26	19	1.99
1026428--1026486	30	2.0	30	93	0	100	33	23	3	38	1.72
1026853--1027024	67	2.6	67	86	4	222	17	27	27	27	1.98
1033035--1033101	22	3.0	22	95	4	118	26	26	26	19	1.99
1033303--1033372	30	2.3	30	90	0	104	32	21	5	40	1.77
1033732--1033769	20	1.9	20	88	0	58	10	31	34	23	1.89
1033733--1033881	66	2.3	66	90	2	228	17	26	28	27	1.98
1033733--1033903	67	2.6	67	86	5	222	17	26	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040129--1040161	16	2.2	15	89	10	50	27	12	6	54	1.60
1040689--1040721	17	1.9	17	93	0	57	57	0	6	36	1.23
1056625--1056667	15	2.9	15	82	0	50	39	4	0	55	1.20
1057952--1057978	3	9.0	3	100	0	54	66	0	0	33	0.92
1058816--1058853	16	2.4	16	90	0	58	26	5	15	52	1.64
1068667--1068705	20	2.0	20	90	10	62	28	20	25	25	1.99
1074323--1074347	9	2.8	9	100	0	50	12	8	32	48	1.69
1074721--1074745	9	2.8	9	100	0	50	12	8	32	48	1.69
1074308--1075107	398	2.0	398	99	0	1564	17	15	32	34	1.92
1075186--1075224	20	2.0	19	90	5	60	66	2	5	25	1.25
1075417--1075617	40	4.8	41	73	9	174	23	19	32	24	1.97
1075413--1075669	129	2.0	128	96	0	478	24	19	31	24	1.98
1076448--1076527	40	2.0	40	95	0	142	36	11	21	31	1.88
1076529--1077132	67	8.9	67	83	7	743	43	13	13	30	1.82
1076529--1077141	212	3.0	199	87	8	819	43	13	13	30	1.82
1076869--1076946	30	2.7	29	81	15	90	43	15	8	32	1.78
1076925--1077028	52	2.0	53	92	3	174	36	16	13	33	1.88
1077020--1077149	30	4.1	30	73	21	122	42	12	12	33	1.80
1077081--1077157	30	2.7	29	82	13	97	42	15	9	32	1.78
1076783--1077277	212	2.3	212	97	0	936	41	13	13	31	1.83
1077137--1077239	52	1.9	53	90	3	163	35	15	13	34	1.87
1077232--1077386	29	5.3	29	87	9	126	43	14	10	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1077251--1077386	29	4.7	29	88	5	186	44	14	10	30	1.79
1077630--1077721	36	2.6	36	82	3	116	36	13	19	30	1.90
1077876--1078110	105	2.3	100	82	9	260	39	11	18	30	1.86
1082322--1082383	32	2.0	32	96	3	117	61	9	14	14	1.57
1086062--1086086	9	2.8	9	100	0	50	12	8	32	48	1.69
1086460--1086484	9	2.8	9	100	0	50	12	8	32	48	1.69
1086047--1086846	398	2.0	398	99	0	1582	17	16	32	34	1.92
1086925--1086963	20	2.0	19	90	5	60	66	2	5	25	1.25
1091914--1091967	23	2.3	24	74	3	56	53	12	3	29	1.56
1097167--1097397	122	1.9	124	85	5	326	25	10	19	44	1.83

Tables:   1   2   3   4   5   6   7