genome.fa.s7841.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007841.1 Hibiscus syriacus cultivar Beakdansim tig00110195_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1873963

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379682--379719	20	1.9	20	100	0	76	31	10	18	39	1.85
382753--382804	20	2.6	20	87	0	77	36	26	13	23	1.92
382878--383073	20	9.7	20	75	7	173	37	23	18	20	1.94
382878--383071	81	2.4	80	86	5	239	38	23	18	20	1.93
382879--383071	40	4.8	41	87	3	250	38	23	18	20	1.93
383629--383704	20	3.8	20	85	5	93	51	18	18	11	1.76
383706--383747	19	2.2	19	86	0	57	50	26	14	9	1.73
383746--383796	19	2.7	19	93	0	84	11	21	19	47	1.81
383794--383845	20	2.6	20	79	11	70	15	25	19	40	1.90
385443--385492	18	2.8	18	96	0	91	32	20	4	44	1.70
385500--385876	94	4.0	94	90	1	551	22	11	16	49	1.78
385964--386030	19	3.8	19	79	18	81	46	28	17	7	1.75
386036--386118	19	4.6	19	82	14	122	9	21	22	45	1.81
386595--386664	21	3.2	21	66	8	50	22	35	21	20	1.96
388173--388211	19	2.1	19	85	9	53	48	17	12	20	1.80
388216--388363	33	4.3	33	71	14	127	14	20	19	45	1.84
388262--388307	20	2.3	19	82	10	56	19	21	19	39	1.93
388214--388349	73	1.9	72	84	4	184	14	20	19	44	1.86
388355--388429	20	3.7	20	68	16	55	24	16	25	34	1.95
390900--390953	24	2.2	24	93	0	90	40	20	18	20	1.91
390900--390967	24	2.8	24	84	0	64	38	20	17	23	1.93
391808--391860	20	2.7	20	71	11	54	22	16	20	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391857--391902	21	2.2	21	88	0	65	36	17	28	17	1.92
392344--392400	22	2.6	22	91	0	87	28	36	10	24	1.88
396294--396355	33	1.9	32	86	3	88	33	0	16	50	1.45
396721--396807	39	2.2	39	93	0	147	18	13	19	48	1.81
397500--397549	25	2.0	25	84	0	64	42	18	8	32	1.79
397640--397681	20	2.1	20	100	0	84	28	26	21	23	1.99
400289--400342	24	2.2	24	93	0	90	40	20	18	20	1.91
400289--400356	24	2.8	24	84	0	64	38	20	17	23	1.93
401258--401457	20	10.0	20	75	10	133	27	14	24	34	1.94
401905--401954	18	2.9	17	85	11	66	38	6	28	28	1.80
401944--402069	44	2.9	44	92	3	209	28	14	21	35	1.92
402573--402651	38	2.1	38	92	4	133	37	39	10	12	1.77
403019--403110	28	3.3	28	96	1	168	42	33	10	13	1.78
403765--403821	28	2.0	28	100	0	114	59	3	3	33	1.31
405567--405764	59	3.3	61	83	5	185	23	25	15	35	1.94
405603--405783	59	3.1	58	86	4	211	25	28	14	31	1.95
405643--405810	59	2.9	58	84	1	167	25	26	15	32	1.96
407389--407451	28	2.2	28	91	0	99	25	25	11	38	1.89
409247--409291	21	2.1	22	87	4	65	37	0	4	57	1.19
412298--412335	11	3.5	11	85	3	51	47	10	0	42	1.38
412304--412376	31	2.5	29	78	8	76	43	8	2	45	1.48
412295--412380	29	2.9	28	75	10	82	44	8	2	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421553--421631	23	3.4	22	77	5	68	39	2	1	56	1.21
429071--429131	27	2.4	24	76	17	61	40	1	4	52	1.33
434321--434425	52	2.0	52	94	0	183	36	8	24	30	1.86
436369--436456	33	2.7	33	80	3	106	22	15	30	30	1.95
443746--443860	51	2.3	50	77	7	115	20	27	27	24	1.99
449971--450317	48	7.2	48	75	4	216	20	3	49	26	1.65
449971--450317	96	3.6	96	74	5	272	20	3	49	26	1.65
450000--450320	144	2.2	144	78	3	313	19	4	49	26	1.66
450010--450320	48	6.5	48	75	7	238	19	4	49	27	1.66
450241--450392	75	2.0	75	86	7	211	18	1	50	30	1.55
450314--450824	48	10.6	48	77	6	430	19	3	50	26	1.63
450157--450497	171	2.0	171	87	5	494	19	1	50	28	1.58
450196--450449	123	2.1	123	85	6	345	18	1	52	27	1.54
450316--450824	96	5.3	96	81	4	512	19	3	50	26	1.63
450316--450788	192	2.5	190	84	5	578	19	3	50	26	1.62
450367--450984	192	3.2	191	81	6	591	18	3	49	27	1.65
450655--451028	204	1.9	198	82	5	473	18	4	47	29	1.69
451000--451063	33	1.9	33	87	0	92	20	4	45	29	1.71
450999--451070	33	2.2	33	82	0	90	18	4	47	30	1.67
451033--451127	27	3.7	27	74	16	94	20	3	45	31	1.66
451033--451094	21	2.6	22	82	14	63	19	1	50	29	1.57
451324--451409	36	2.4	36	84	3	111	27	8	41	22	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451240--451563	150	2.2	150	85	0	441	24	6	40	28	1.80
451474--451598	36	3.5	36	84	2	153	22	7	43	27	1.79
451474--451635	72	2.2	72	83	2	200	21	8	43	26	1.81
451477--451635	36	4.4	34	81	6	129	21	8	42	27	1.82
452406--452484	24	3.3	23	69	13	61	29	1	44	25	1.62
452447--453169	48	14.8	48	75	6	389	20	5	48	25	1.72
452547--452869	150	2.2	144	84	3	412	22	1	51	24	1.57
452793--452998	99	2.1	99	84	1	261	16	7	47	28	1.74
452796--453160	144	2.5	146	80	7	454	18	8	46	27	1.77
455275--455316	21	2.0	20	86	4	57	47	2	2	47	1.28
456933--456994	2	31.0	2	88	0	88	51	4	0	43	1.23
456930--456994	16	4.1	16	89	0	103	50	6	0	43	1.27
456921--456994	18	4.2	18	79	19	77	50	6	1	41	1.37
460485--460597	60	1.9	60	85	3	156	35	6	24	33	1.81
464930--464954	2	12.5	2	100	0	50	48	0	0	52	1.00
467533--467586	4	13.5	4	100	0	108	50	25	0	24	1.50
468193--468242	26	1.9	26	87	0	73	36	14	6	44	1.69
468382--468739	4	90.0	4	98	1	702	25	0	24	50	1.50
470876--471204	21	15.6	20	66	20	97	18	19	26	35	1.95
470942--471011	20	3.5	20	70	18	72	12	22	24	40	1.89
470921--471229	41	7.4	41	76	11	270	18	20	24	36	1.95
470872--471145	62	4.3	62	78	10	293	19	19	25	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470982--471122	69	2.0	70	93	2	239	20	18	26	34	1.96
471313--471368	6	9.3	6	100	0	112	33	50	16	0	1.45
474571--474603	14	2.4	14	94	0	57	24	39	30	6	1.79
474585--474647	33	1.9	33	90	0	99	23	28	38	9	1.86
474666--474751	29	3.0	29	98	0	163	20	31	33	13	1.92
474763--474840	33	2.4	33	87	4	106	10	35	26	26	1.89
474806--474858	23	2.3	23	93	0	88	16	30	26	26	1.97
474852--474905	20	2.7	20	91	0	90	11	25	37	25	1.89
474892--474919	14	2.0	14	100	0	56	7	28	42	21	1.79
474852--474905	10	5.4	10	77	16	58	11	25	37	25	1.89
475223--475340	29	4.1	29	96	0	209	17	36	30	15	1.91
475804--475859	29	1.9	29	82	7	69	46	5	3	44	1.43
478575--478713	20	6.8	21	72	4	113	17	17	25	38	1.92
478572--478713	41	3.5	41	95	0	257	18	18	24	38	1.92
478579--478760	82	2.2	80	84	7	249	20	17	23	38	1.93
478831--478870	6	6.7	6	88	0	62	37	47	12	2	1.55
479373--479401	6	4.8	6	100	0	58	0	17	48	34	1.47
479493--479552	20	2.9	20	76	13	68	38	25	23	13	1.91
482929--482980	21	2.5	21	87	3	70	38	17	25	19	1.93
482929--483016	20	4.3	20	73	12	72	40	18	20	20	1.91
482969--483063	20	4.7	20	80	2	91	34	24	17	23	1.96
482966--483043	41	1.9	41	86	0	111	39	21	16	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483573--483615	20	2.2	20	95	0	77	13	18	13	53	1.73
484930--484974	18	2.5	18	88	0	72	26	44	15	13	1.83
485456--485522	20	3.4	20	81	2	73	38	23	22	14	1.92
485511--485568	14	3.9	14	81	16	71	50	24	17	8	1.74
485495--485585	32	2.8	33	93	3	157	48	21	18	10	1.79
485456--485590	19	7.6	19	73	19	94	43	22	20	12	1.86
485602--485659	14	3.9	14	79	16	71	8	17	25	48	1.75
485597--485675	32	2.4	33	93	2	133	11	18	22	46	1.81
485616--485733	20	6.4	19	77	11	95	13	20	24	41	1.88
487512--487547	13	2.6	14	86	8	56	27	0	22	50	1.50

Tables:   1   2   3   4   5   6   7