genome.fa.s7841.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007841.1 Hibiscus syriacus cultivar Beakdansim tig00110195_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1873963

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1700515--1700611	48	2.0	48	91	0	158	26	21	28	22	1.99
1701786--1701837	27	1.9	27	92	0	86	36	9	11	42	1.74
1704103--1704171	33	2.1	33	91	0	111	43	11	20	24	1.85
1705637--1705702	29	2.2	30	84	10	91	37	6	4	51	1.47
1712534--1712595	2	31.0	2	100	0	124	50	0	0	50	1.00
1712721--1712808	39	2.3	39	86	4	115	29	26	22	21	1.99
1726481--1726514	3	11.3	3	100	0	68	67	0	0	32	0.91
1726937--1726999	19	3.3	19	65	8	56	41	14	6	38	1.71
1728410--1728449	20	2.0	20	85	0	53	57	20	12	10	1.63
1728432--1728471	14	2.9	14	88	3	64	60	27	10	2	1.42
1728724--1728755	14	2.1	16	88	11	50	50	18	15	15	1.79
1728839--1728872	16	2.1	17	88	5	52	52	14	5	26	1.64
1740418--1740460	2	21.5	2	100	0	86	48	0	0	51	1.00
1742545--1742578	18	1.9	18	88	5	52	52	2	5	38	1.41
1743476--1743563	31	2.8	30	80	11	106	22	25	9	43	1.82
1746499--1746611	34	3.3	34	70	14	97	25	5	26	42	1.76
1746729--1746759	2	15.5	2	100	0	62	48	0	0	51	1.00
1750664--1750713	23	2.3	21	86	6	64	32	38	18	12	1.87
1756002--1756332	164	2.0	165	96	2	614	38	18	14	28	1.90
1756376--1756422	21	2.3	21	89	7	71	31	2	0	65	1.04
1760138--1760189	15	3.5	15	94	0	86	7	15	69	7	1.35
1760821--1760908	29	3.0	29	70	18	92	62	5	3	28	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1761891--1761928	18	2.2	18	90	4	60	28	2	2	65	1.19
1765309--1765369	27	2.3	26	97	2	113	54	6	29	9	1.59
1765560--1765603	18	2.5	17	88	3	61	38	0	2	59	1.10
1774698--1774744	18	2.6	18	80	12	60	46	19	2	31	1.61
1777829--1777881	23	2.3	23	77	6	54	50	0	1	47	1.12
1779012--1779129	21	5.7	21	71	6	80	35	26	16	21	1.95
1779116--1779345	20	11.5	20	82	6	216	36	24	17	20	1.94
1779116--1779345	40	5.7	39	89	6	250	36	24	17	20	1.94
1780027--1780073	24	2.0	24	87	8	69	25	14	21	38	1.92
1782600--1782697	19	5.4	19	83	13	134	15	22	16	45	1.84
1782581--1782697	53	2.2	52	96	1	216	14	23	17	44	1.85
1782756--1782832	19	4.3	19	80	15	110	45	18	22	14	1.85
1782752--1782870	52	2.3	52	85	0	175	38	19	21	20	1.93
1782841--1782976	19	7.6	19	75	17	139	14	21	19	44	1.86
1782841--1782976	53	2.6	52	88	2	209	14	21	19	44	1.86
1782898--1782961	33	1.9	33	100	0	128	12	20	18	48	1.80
1783083--1783119	14	2.6	14	91	0	65	45	21	0	32	1.52
1785044--1785172	19	7.3	19	74	17	98	46	25	17	10	1.79
1785100--1785156	14	3.7	14	77	20	60	45	22	21	10	1.82
1785081--1785172	33	2.8	33	91	0	148	46	23	19	9	1.80
1785168--1785302	19	7.6	19	75	16	128	8	17	28	45	1.79
1785173--1785265	33	2.8	33	93	3	152	7	18	27	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1785346--1785722	92	4.1	93	96	2	708	45	18	12	22	1.84
1785346--1785722	183	2.0	184	97	1	720	45	18	12	22	1.84
1787424--1787513	14	5.7	14	74	23	81	42	23	25	8	1.83
1787416--1787530	33	3.5	33	95	0	212	45	20	24	9	1.81
1787423--1787535	19	6.8	18	72	23	88	43	22	24	9	1.83
1787547--1787600	14	3.5	14	73	22	54	7	25	24	42	1.80
1787531--1787611	33	2.5	33	93	0	135	7	23	22	46	1.76
1787587--1787664	41	1.9	41	94	0	138	11	26	16	44	1.82
1787588--1787663	21	3.7	21	82	3	100	10	26	17	46	1.80
1787743--1787813	33	2.2	33	89	0	106	47	16	23	11	1.79
1787995--1788049	22	2.5	22	81	0	74	20	16	40	23	1.91
1788195--1788348	20	7.7	20	83	4	202	21	20	25	33	1.97
1788197--1788365	60	2.8	60	82	2	223	21	20	24	33	1.97
1788194--1788365	40	4.3	40	81	2	184	20	20	25	33	1.97
1788355--1788407	21	2.5	21	90	0	88	22	20	22	33	1.97
1791559--1791589	16	1.9	16	93	0	53	35	3	12	48	1.58
1794097--1794122	2	13.0	2	100	0	52	50	0	0	50	1.00
1797158--1797236	38	2.1	37	95	2	140	36	36	12	13	1.83
1797882--1797948	29	2.3	29	97	0	125	16	35	26	20	1.94
1798058--1798162	29	3.6	29	81	2	113	26	24	31	17	1.97
1801124--1801175	10	4.8	10	80	15	59	59	17	9	13	1.60
1801107--1801175	23	3.0	23	85	6	88	59	17	10	13	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1806125--1806152	2	14.0	2	100	0	56	50	0	0	50	1.00
1807524--1807552	12	2.5	12	94	5	51	65	0	0	34	0.93
1813627--1813690	28	2.2	29	80	8	76	31	7	9	51	1.62
1813697--1813772	2	38.0	2	100	0	152	50	0	0	50	1.00
1815573--1815644	30	2.4	30	92	0	117	30	25	20	23	1.99
1815631--1815755	31	4.0	30	78	13	110	30	20	20	28	1.98
1816517--1816560	21	2.1	21	86	0	61	15	27	27	29	1.96
1820799--1820870	30	2.4	30	95	0	126	30	23	20	25	1.99
1820854--1820981	31	4.1	30	79	13	143	29	19	21	29	1.97
1821745--1821788	21	2.1	21	86	0	61	15	27	27	29	1.96
1827971--1828014	18	2.4	18	96	0	79	45	15	4	34	1.67
1830271--1830308	2	19.0	2	100	0	76	50	0	0	50	1.00
1834830--1834882	26	2.0	26	96	0	97	37	18	15	28	1.91
1841400--1841546	59	2.5	60	83	5	167	31	18	4	46	1.68
1843023--1843056	7	4.9	7	96	0	59	0	2	38	58	1.13
1847552--1847582	2	15.5	2	100	0	62	48	0	0	51	1.00
1852493--1852545	22	2.5	22	87	3	81	60	5	13	20	1.53
1854413--1855393	105	9.3	105	98	0	1845	23	18	25	33	1.97
1864341--1864366	12	2.2	12	100	0	52	0	38	23	38	1.55
1868963--1868997	11	3.0	11	91	8	52	51	8	0	40	1.33

Tables:   1   2   3   4   5   6   7

The End!