genome.fa.s7841.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007841.1 Hibiscus syriacus cultivar Beakdansim tig00110195_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1873963

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1101708--1101735	2	14.0	2	100	0	56	0	50	0	50	1.00
1107386--1107414	2	14.5	2	100	0	58	51	0	0	48	1.00
1113075--1113139	32	2.0	32	93	0	112	30	4	13	50	1.62
1113126--1113170	21	2.1	22	83	4	56	35	11	15	37	1.83
1116749--1116784	16	2.4	15	90	9	56	38	0	2	58	1.13
1127682--1127743	30	2.0	32	93	6	110	41	6	6	45	1.55
1131822--1131879	26	2.2	26	90	6	91	43	8	5	43	1.57
1138359--1138400	9	4.7	9	77	11	50	38	52	2	7	1.42
1138359--1138424	27	2.3	27	87	7	87	34	51	6	7	1.55
1139797--1139826	2	15.0	2	100	0	60	50	0	0	50	1.00
1140420--1140461	9	4.7	9	90	0	66	71	0	0	28	0.86
1145149--1145193	21	2.1	21	87	0	63	48	6	4	40	1.49
1146316--1146362	23	2.0	23	91	0	76	17	21	27	34	1.95
1149319--1149348	6	5.2	6	92	8	53	0	50	0	50	1.00
1154309--1154333	2	12.5	2	100	0	50	48	0	0	52	1.00
1156026--1156121	2	48.0	2	100	0	192	50	0	0	50	1.00
1166188--1166234	21	2.3	21	92	3	78	63	0	4	31	1.13
1168118--1168163	23	2.0	23	100	0	92	30	13	17	39	1.87
1170349--1170431	32	2.6	32	82	5	105	28	9	20	40	1.84
1170349--1170443	32	2.8	34	78	13	99	29	11	18	40	1.86
1171927--1172014	29	3.0	29	91	3	142	22	20	19	37	1.94
1181144--1181173	3	10.0	3	92	0	51	63	0	3	33	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1182399--1182495	32	3.1	32	80	7	117	44	2	3	50	1.29
1182899--1182974	11	7.5	11	79	18	94	73	7	1	17	1.13
1182899--1182972	20	3.8	20	96	1	132	74	8	1	16	1.12
1185754--1185778	2	12.5	2	100	0	50	0	48	0	52	1.00
1195219--1195265	20	2.3	20	92	3	76	29	8	4	57	1.48
1217679--1217790	35	3.2	34	87	6	154	41	23	0	33	1.60
1218842--1218953	35	3.2	34	87	2	152	34	0	21	42	1.59
1233717--1233759	22	2.0	22	86	4	61	34	23	0	41	1.55
1238654--1238737	31	2.8	31	87	3	127	46	0	0	53	1.00
1248537--1248572	6	6.0	6	100	0	72	66	0	16	16	1.25
1256594--1256632	11	3.5	11	82	6	51	79	0	0	20	0.73
1256594--1256632	12	3.3	12	85	3	53	79	0	0	20	0.73
1257218--1257242	11	2.3	11	100	0	50	80	8	0	12	0.92
1260429--1260473	2	22.5	2	100	0	90	51	0	0	48	1.00
1260658--1260692	17	2.1	17	100	0	70	22	28	14	34	1.93
1265292--1265346	28	1.9	29	82	10	69	60	5	5	29	1.42
1273953--1273977	12	2.1	12	100	0	50	32	0	0	68	0.90
1273953--1274001	20	2.5	19	77	9	53	32	2	0	65	1.04
1274865--1274919	24	2.3	23	84	3	65	21	14	18	45	1.85
1288913--1288978	20	3.3	20	72	16	73	25	24	19	30	1.98
1288892--1288998	40	2.7	40	92	5	164	25	28	19	27	1.99
1288933--1289005	20	3.7	20	73	14	78	24	26	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1288912--1288998	40	2.2	40	100	0	174	26	25	19	28	1.99
1290643--1290672	14	2.1	14	93	0	51	46	23	20	10	1.80
1290657--1290745	20	4.4	20	89	0	124	39	22	21	16	1.92
1290813--1290865	14	3.5	14	74	18	52	13	22	20	43	1.86
1290792--1290874	32	2.5	32	90	3	121	14	21	19	44	1.86
1292420--1292493	21	3.5	21	76	7	87	21	27	28	22	1.99
1292400--1292544	42	3.5	42	87	2	184	21	19	37	22	1.95
1292442--1292553	21	5.3	21	70	6	84	20	18	37	23	1.94
1292430--1292563	42	3.2	42	89	2	189	21	17	38	21	1.93
1292916--1292984	20	3.5	20	85	0	84	36	27	21	14	1.93
1292956--1293049	33	2.8	34	85	3	127	43	22	20	13	1.87
1292989--1293057	20	3.8	19	76	21	85	47	18	20	13	1.81
1292976--1293038	14	4.1	14	77	18	63	46	22	20	11	1.82
1293061--1293097	19	1.9	19	94	0	65	10	27	18	43	1.83
1293099--1293166	20	3.5	20	85	2	93	17	20	25	36	1.94
1293301--1293358	22	2.6	22	94	0	107	37	24	6	31	1.82
1293325--1293439	22	5.3	22	81	1	106	40	29	7	22	1.82
1293665--1293712	21	2.3	21	92	0	78	41	33	10	14	1.80
1293676--1293717	21	2.0	21	95	0	75	40	30	14	14	1.85
1293946--1293993	18	2.7	18	84	12	71	14	12	43	29	1.82
1295349--1295433	14	5.5	14	70	24	64	43	20	22	14	1.87
1295362--1295419	18	3.5	17	71	26	52	44	18	18	17	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1295349--1295438	32	2.8	32	96	0	162	42	20	23	14	1.88
1295444--1295473	14	2.1	14	93	0	51	6	20	23	50	1.71
1295445--1295523	32	2.4	33	87	4	115	13	24	22	39	1.91
1295495--1295582	20	4.5	19	79	14	90	14	23	22	38	1.92
1295495--1295582	40	2.2	39	86	9	117	14	23	22	38	1.92
1295911--1295968	22	2.6	22	86	0	89	18	18	43	18	1.89
1296148--1296221	20	3.7	20	82	10	96	17	18	29	33	1.94
1296148--1296244	21	4.7	21	79	6	92	17	19	26	36	1.94
1296148--1296242	41	2.3	41	87	3	129	17	20	27	34	1.95
1296169--1296261	20	4.6	19	74	14	71	16	20	25	37	1.93
1296254--1296303	21	2.4	21	75	0	55	36	22	24	18	1.95
1296782--1296894	59	1.9	59	83	1	145	38	4	11	45	1.61
1301057--1301142	44	2.0	42	90	4	136	17	5	25	51	1.68
1315664--1315702	20	2.0	20	94	0	69	25	0	23	51	1.49
1322822--1323043	72	3.1	72	89	2	313	36	14	23	25	1.93
1324489--1324810	82	4.0	81	70	14	211	42	9	9	37	1.71
1330495--1330698	111	1.8	110	95	3	374	41	7	2	48	1.44
1337624--1337658	2	17.5	2	100	0	70	51	0	0	48	1.00
1340392--1340455	30	2.1	30	82	0	74	31	3	10	54	1.51
1345921--1345983	28	2.2	28	100	0	126	22	7	14	55	1.64
1345921--1345991	28	2.5	28	93	2	97	23	7	14	54	1.64
1346983--1347102	60	2.0	60	93	0	204	26	14	23	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1349694--1349775	37	2.1	40	84	6	107	50	9	2	37	1.49
1350548--1350581	16	2.1	16	89	10	52	64	0	0	35	0.94
1351382--1351428	22	2.1	23	84	7	62	31	2	4	61	1.27
1359756--1359827	15	4.7	15	72	3	54	29	4	2	63	1.27
1370647--1370689	18	2.3	19	80	15	54	41	0	4	53	1.21
1370970--1371046	20	3.7	21	68	18	61	38	2	2	55	1.27
1376730--1376780	26	2.0	25	88	3	75	23	11	23	41	1.87
1378609--1378639	3	10.3	3	100	0	62	67	0	0	32	0.91
1379907--1379964	28	2.1	28	96	0	107	41	36	6	15	1.74
1379911--1379972	28	2.2	28	88	2	90	45	32	6	16	1.72
1393036--1393069	12	2.8	12	86	0	50	58	2	35	2	1.28
1399514--1399788	102	2.7	100	83	3	354	40	10	21	27	1.87
1412583--1412634	2	26.0	2	100	0	104	50	0	0	50	1.00
1415304--1415340	18	2.1	18	94	0	65	51	5	8	35	1.55
1417816--1417866	27	1.9	27	96	4	95	29	15	7	47	1.74
1420568--1420606	2	19.5	2	100	0	78	48	0	0	51	1.00
1420870--1420913	18	2.4	18	77	7	54	52	6	6	34	1.55
1423017--1423073	21	2.7	21	81	10	80	24	17	17	40	1.91
1424887--1424927	21	1.9	21	90	5	64	65	0	0	34	0.93
1432211--1432388	63	2.8	63	87	1	241	17	26	10	44	1.82
1450396--1450458	33	1.9	33	100	0	126	25	23	11	39	1.88
1452443--1452468	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1464311--1464354	14	3.0	14	87	9	61	54	0	45	0	0.99
1464937--1464980	13	3.3	13	84	6	61	43	4	0	52	1.22
1464937--1464973	14	2.8	13	88	8	56	43	5	0	51	1.24
1465204--1465238	2	17.5	2	100	0	70	48	0	0	51	1.00
1465316--1465353	19	2.1	19	95	5	69	28	0	23	47	1.52
1465740--1465766	2	13.5	2	100	0	54	51	0	0	48	1.00
1465840--1465893	21	2.5	22	80	14	60	48	11	3	37	1.57
1467915--1467966	25	2.0	25	85	3	68	42	11	3	42	1.59
1472730--1472799	28	2.4	28	81	15	72	45	4	8	41	1.54
1472940--1473027	31	2.9	31	82	11	96	45	5	6	42	1.54

Tables:   1   2   3   4   5   6   7