Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007849.1 Hibiscus syriacus cultivar Beakdansim tig00110206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3141433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1357 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3062208--3062268
31
2.0
31
90
0
95
45
9
4
39
1.59
3065967--3066059
21
4.4
20
75
12
71
21
16
24
37
1.93
3067309--3067526
51
4.3
51
68
15
128
31
7
16
44
1.77
3067341--3067526
104
1.8
102
87
6
277
31
8
17
43
1.78
3067289--3067576
25
11.3
25
69
11
129
31
7
17
43
1.78
3068285--3068357
24
3.0
24
90
4
76
9
15
26
49
1.74
3068295--3068350
14
4.3
14
82
17
84
7
14
26
51
1.67
3068296--3068357
24
2.6
24
97
0
115
8
12
25
53
1.66
3081142--3081183
20
2.1
20
95
0
75
4
21
45
28
1.72
3081437--3081519
3
25.7
3
73
26
64
67
0
1
31
0.98
3081448--3081518
13
5.1
13
79
20
81
66
0
1
32
1.01
3081436--3081507
30
2.4
30
90
0
126
68
0
1
30
0.99
3081436--3081507
10
7.2
10
81
12
94
68
0
1
30
0.99
3081590--3081632
21
2.0
21
90
0
68
44
6
0
48
1.29
3081608--3081939
37
9.0
37
74
12
206
42
8
3
46
1.50
3081610--3081774
76
2.2
74
79
7
181
43
8
2
46
1.47
3082542--3083118
85
6.8
85
87
0
760
27
18
20
34
1.96
3084868--3084896
2
14.5
2
100
0
58
51
0
0
48
1.00
3093976--3094020
22
2.0
22
100
0
90
24
17
13
44
1.85
3097528--3097617
26
3.4
26
87
1
117
15
41
18
24
1.90
3098196--3098233
20
1.9
20
88
0
58
28
23
13
34
1.92
3100347--3100407
22
2.8
22
95
2
106
57
0
3
39
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3103423--3103491
23
3.0
23
78
0
84
33
23
11
31
1.90
3106745--3106803
24
2.5
24
85
0
82
23
16
13
45
1.83
3113924--3114708
113
7.0
113
82
9
935
29
19
14
37
1.91
3113925--3114711
225
3.5
225
92
2
1239
29
19
14
37
1.91
3113924--3114709
337
2.3
335
85
6
1057
29
19
14
37
1.91
3115111--3115165
22
2.5
22
87
0
83
36
14
14
34
1.87
3117622--3117962
114
3.0
114
93
0
556
31
19
15
33
1.93
3120132--3120247
6
17.9
7
85
11
101
2
23
60
13
1.46
3120226--3120279
6
9.0
6
85
0
54
1
40
53
3
1.29
3120214--3120264
18
2.8
18
84
0
57
0
35
60
3
1.15
3120228--3120261
17
2.0
17
88
0
50
0
41
58
0
0.98
3120251--3120290
18
2.2
19
90
4
64
7
32
50
10
1.64
3120228--3120283
12
4.8
12
82
4
60
3
37
55
3
1.35
3120280--3141433
7
3081.3
7
93
5
33792
14
1
42
41
1.55
3139878--3139904
9
3.0
9
100
0
54
11
0
33
55
1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!