genome.fa.s7849.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007849.1 Hibiscus syriacus cultivar Beakdansim tig00110206_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3141433

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  2  of  12  ( 1357 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366956--368013	54	19.6	54	91	0	1717	33	20	25	20	1.97
367982--368313	55	6.1	55	86	5	383	29	15	25	29	1.96
367982--368313	108	3.1	107	83	6	395	29	15	25	29	1.96
385967--385994	2	14.0	2	100	0	56	50	0	0	50	1.00
389563--389623	24	2.6	23	75	17	63	32	0	1	65	1.02
389561--389625	8	8.0	8	72	16	53	33	0	1	64	1.03
389584--389625	17	2.4	19	80	15	54	33	0	2	64	1.07
389574--389640	8	8.4	8	70	18	50	28	1	1	68	1.07
391904--391953	24	2.1	23	85	3	64	24	0	8	68	1.16
391904--391991	33	2.6	33	85	7	115	21	1	12	64	1.33
391986--392066	38	2.3	31	75	24	81	25	9	9	54	1.64
397294--397327	16	2.1	16	88	0	50	35	5	32	26	1.81
397973--398024	22	2.3	23	83	3	61	26	28	25	19	1.98
397984--398054	23	3.2	22	79	11	74	22	33	22	21	1.97
399870--400048	90	2.0	90	88	3	270	45	6	11	36	1.66
403080--403105	13	2.0	13	100	0	52	23	30	23	23	1.99
407782--407956	87	2.0	87	88	0	260	20	20	10	48	1.79
410140--410212	2	36.5	2	100	0	146	49	0	0	50	1.00
412093--412144	22	2.3	23	80	9	63	50	5	1	42	1.37
414131--414503	184	2.0	187	92	4	623	42	3	8	45	1.52
421925--421969	17	2.6	17	75	0	54	42	0	2	55	1.12
421980--422013	16	2.1	16	89	10	52	58	5	0	35	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428617--428712	36	2.6	37	80	1	122	33	13	13	39	1.84
429455--430090	106	6.0	106	89	1	934	22	19	25	33	1.97
430097--430200	36	2.8	37	83	2	138	38	13	20	27	1.90
430983--431059	22	3.5	22	82	7	102	24	10	23	41	1.85
431672--431712	19	2.2	18	86	4	55	2	17	7	73	1.17
431681--431724	18	2.4	18	88	7	63	0	15	9	75	1.05
431683--431724	9	4.7	9	82	5	50	0	16	9	73	1.08
434899--434959	21	2.9	21	78	16	63	70	0	6	22	1.10
434840--434959	18	5.8	20	68	25	72	71	0	6	20	1.13
434846--434964	22	5.8	21	70	23	76	71	0	6	21	1.14
434840--434976	61	2.3	60	78	15	142	74	0	5	18	1.06
434890--434983	33	2.9	31	75	14	91	75	0	4	20	0.97
435426--435511	34	2.5	35	82	3	111	36	10	12	40	1.78
436064--436151	43	2.0	43	91	0	140	26	19	15	38	1.92
436333--436368	18	2.1	17	90	10	56	61	5	0	33	1.19
440279--440335	23	2.5	23	100	0	114	54	3	0	42	1.17
441440--441475	2	18.5	2	88	5	56	47	2	0	50	1.15
449277--449336	30	2.0	30	87	9	88	41	0	5	53	1.23
457858--457970	50	2.3	50	81	3	138	19	27	35	17	1.94
461128--461268	69	2.0	69	97	0	264	36	6	17	39	1.75
464176--464238	30	2.1	30	100	0	126	55	12	6	25	1.60
469481--469532	26	1.9	28	88	7	81	67	0	1	30	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470692--470826	5	26.6	5	70	25	72	54	2	0	42	1.15
470701--470829	2	72.0	2	65	30	62	53	3	0	43	1.16
470692--470795	22	4.6	23	77	18	112	56	1	0	41	1.10
470692--470829	26	5.4	26	74	18	105	54	2	0	42	1.15
470695--470821	21	6.1	20	74	17	75	54	3	0	42	1.16
472282--472349	20	3.3	20	69	4	64	33	23	16	26	1.95
472318--472503	20	9.2	21	73	12	140	41	23	15	19	1.90
472318--472503	101	1.8	101	90	0	300	41	23	15	19	1.90
472966--473019	20	2.7	19	80	8	63	16	16	20	46	1.84
475142--475239	21	4.7	20	73	14	81	26	35	15	22	1.94
475138--475239	42	2.4	43	79	11	120	26	36	14	22	1.93
476660--476696	14	2.6	14	95	0	65	29	0	18	51	1.47
476610--476762	80	2.0	74	86	7	207	31	0	17	50	1.51
476900--476942	20	2.2	20	91	0	68	18	18	20	41	1.90
477118--477204	39	2.2	39	95	0	156	17	13	20	48	1.81
477505--477540	12	3.0	12	87	0	54	47	2	8	41	1.48
478004--478048	20	2.2	20	88	0	72	35	26	22	15	1.94
480639--480692	24	2.2	24	90	0	81	38	20	16	24	1.92
481485--481553	23	3.0	23	80	0	84	28	24	24	21	1.99
484010--484043	12	2.8	12	90	0	50	14	0	29	55	1.40
484773--484882	19	5.6	19	76	11	98	20	15	24	39	1.92
484768--484882	39	2.9	39	83	10	155	20	14	24	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488274--488322	2	24.5	2	100	0	98	48	0	0	51	1.00
488824--488852	3	9.7	3	100	0	58	31	0	0	68	0.89
489435--489556	60	2.0	60	87	0	172	38	4	23	32	1.76
502118--502178	31	2.0	31	96	0	113	45	18	8	27	1.77
505949--506009	30	2.0	30	100	0	122	44	26	6	22	1.77
508934--508958	2	12.5	2	100	0	50	48	0	0	52	1.00
511155--511353	104	1.9	104	88	2	301	38	14	16	30	1.89
516543--516574	13	2.4	14	90	10	50	37	6	3	53	1.42
522188--522220	15	2.2	15	89	10	50	48	12	18	21	1.80
522980--523143	29	5.7	29	84	7	183	40	23	4	31	1.75
522959--523137	59	3.1	56	80	10	182	42	21	5	31	1.74
529355--529387	15	2.2	15	89	10	50	48	12	18	21	1.80
530124--530272	29	5.1	29	83	13	159	40	20	6	32	1.77
530150--530272	59	2.1	57	89	5	185	39	21	6	32	1.79
530276--530300	13	1.9	13	100	0	50	12	24	48	16	1.79
531877--532014	57	2.4	57	78	6	152	34	11	14	39	1.82
531908--532025	58	2.1	57	82	7	141	32	16	14	36	1.89
533550--533585	17	2.1	17	89	0	54	25	8	13	52	1.68
533973--534013	20	2.0	20	100	0	82	34	19	9	36	1.85
535286--535337	18	3.2	18	65	30	53	59	7	23	9	1.54
535277--535337	30	2.0	30	96	0	113	57	6	24	11	1.57
539290--539330	20	2.0	20	100	0	82	34	19	9	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
541149--541184	18	1.9	19	88	5	56	63	0	0	36	0.94
541217--541249	15	2.2	16	89	10	52	42	3	6	48	1.43
541216--541253	14	2.5	15	83	16	51	44	2	5	47	1.39
543271--543300	14	2.1	15	93	6	53	46	0	0	53	1.00
558207--558294	27	3.3	27	95	0	158	29	11	14	44	1.80
561993--562060	27	2.6	27	88	4	95	29	10	16	44	1.80
577806--577842	13	2.8	14	84	8	51	51	5	5	37	1.48
588586--588697	35	3.2	35	90	0	179	32	17	35	14	1.90
595782--595824	15	2.8	15	92	3	68	53	0	4	41	1.21
599963--599999	17	2.2	16	90	4	56	54	0	2	43	1.14
600167--600213	24	1.9	25	82	4	60	61	10	0	27	1.29
600293--600339	20	2.2	20	88	7	67	44	0	19	36	1.51
601451--601562	21	5.3	21	64	16	54	42	0	0	55	1.12
601385--601544	59	2.6	63	78	17	178	40	0	1	57	1.14
601494--601562	21	2.9	24	70	16	63	39	1	1	57	1.16
601530--601591	19	3.3	19	78	15	58	37	1	0	61	1.06
602800--602833	2	17.0	2	100	0	68	50	0	0	50	1.00
602655--603011	174	2.0	179	94	5	629	48	10	4	35	1.60
602980--603011	2	16.5	2	93	6	57	50	0	0	50	1.00
602980--603008	15	1.9	15	100	0	58	48	0	0	51	1.00
614045--614092	23	2.1	23	88	0	69	35	12	16	35	1.87
614481--614543	23	2.7	23	90	0	90	38	19	6	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614204--615068	428	2.0	426	97	1	1646	38	12	8	39	1.74
614896--614947	21	2.5	20	84	9	68	42	19	1	36	1.62
614901--614971	23	3.2	22	84	8	81	39	19	5	35	1.76
617525--618203	184	3.7	184	95	2	1223	34	15	15	34	1.89
620301--620366	32	2.1	32	88	0	96	24	46	1	27	1.61
622478--622530	24	2.2	24	83	6	63	26	7	13	52	1.66
622674--622720	20	2.4	19	79	10	58	19	17	8	55	1.67
622836--622885	20	2.5	20	78	12	66	22	16	12	50	1.77
622951--623396	226	2.0	224	94	0	784	39	7	8	45	1.61
629685--629729	16	2.8	16	100	0	90	31	20	13	35	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12