genome.fa.s7851.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007851.1 Hibiscus syriacus cultivar Beakdansim tig00110210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1608033

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 962 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290117--290181	17	3.6	17	70	22	60	21	23	27	27	1.99
290088--290183	38	2.5	38	96	0	174	25	22	26	26	2.00
291525--291650	4	32.8	4	73	13	95	24	51	22	1	1.57
291571--291674	10	10.3	10	72	10	50	30	49	18	1	1.59
291613--291658	14	3.3	14	93	0	74	19	50	30	0	1.48
294352--294476	31	4.0	31	77	8	137	24	17	20	36	1.94
295522--295590	26	2.6	26	81	9	86	39	4	0	56	1.19
295553--295622	26	2.6	26	75	22	65	35	4	0	60	1.17
301435--301488	21	2.6	21	68	11	56	38	5	14	40	1.70
301961--302007	2	23.5	2	100	0	94	51	0	0	48	1.00
305449--305577	59	2.2	60	92	1	215	31	15	14	38	1.88
305559--305629	31	2.3	31	85	0	88	38	11	15	35	1.83
306201--306276	31	2.5	31	82	0	89	32	11	15	39	1.84
306448--306483	2	18.0	2	100	0	72	50	0	0	50	1.00
308856--308891	18	1.9	19	88	5	56	33	2	0	63	1.08
313385--313519	72	1.9	72	93	0	234	28	22	17	31	1.97
314272--314354	43	1.9	43	100	0	166	36	15	27	20	1.93
316031--316141	36	3.1	36	89	8	165	35	15	22	27	1.94
318304--318716	76	5.4	76	90	4	650	25	18	20	35	1.96
318847--318888	3	13.7	3	90	5	66	38	0	0	61	0.96
319352--319392	20	2.0	20	85	0	55	58	19	19	2	1.50
321414--321478	28	2.3	28	97	0	121	32	10	10	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321733--321805	30	2.4	30	97	0	137	32	26	6	34	1.83
322790--322827	20	1.9	20	89	10	60	28	5	13	52	1.61
326824--326961	36	3.9	35	74	6	143	40	15	21	21	1.91
326819--326961	71	2.0	72	87	4	209	41	15	21	20	1.89
328670--328743	28	2.6	28	95	0	130	12	43	17	27	1.84
329117--329170	21	2.6	21	76	5	65	33	0	12	53	1.39
329147--329200	28	1.9	28	92	0	90	31	0	12	55	1.38
329602--329628	14	1.9	14	100	0	54	7	3	14	74	1.18
329877--329907	16	1.9	16	93	0	53	41	6	3	48	1.45
329878--330035	81	2.0	80	81	13	191	46	5	2	44	1.40
332842--333022	11	16.4	11	65	30	59	42	1	8	47	1.42
332852--332878	14	1.9	14	100	0	54	44	3	7	44	1.49
332901--332945	21	2.1	22	88	12	67	42	0	6	51	1.28
332844--332954	25	4.6	24	72	20	79	42	1	8	47	1.43
332898--333533	59	10.9	59	71	15	394	40	1	10	47	1.49
332957--333013	22	2.5	24	77	16	66	42	0	7	50	1.29
332967--333126	21	7.9	20	67	17	91	44	0	6	48	1.29
332898--333122	60	3.8	60	91	1	339	43	0	8	48	1.32
333092--333148	27	2.1	28	83	9	73	49	1	5	43	1.35
333094--333172	27	3.2	24	72	20	65	48	1	6	44	1.36
333283--333434	11	13.6	11	66	23	61	40	0	11	46	1.45
333366--333457	21	4.2	22	75	14	75	39	1	9	50	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333379--333469	14	6.2	14	69	20	62	39	1	9	49	1.43
333473--333587	49	2.4	48	86	2	142	46	1	6	46	1.38
333546--333602	27	2.1	28	83	9	73	49	1	5	43	1.35
333548--333626	27	3.2	24	72	20	65	48	1	6	44	1.36
336854--336975	43	2.9	43	74	6	124	32	4	4	59	1.35
337501--337775	38	7.3	37	77	10	263	45	3	8	42	1.49
337833--337888	18	3.3	17	83	11	62	19	1	0	78	0.84
337844--337895	6	8.7	6	83	8	61	17	3	0	78	0.89
341046--341282	112	2.1	112	83	4	291	42	14	16	27	1.87
341579--341657	32	2.4	32	91	2	122	49	12	13	24	1.77
343960--344089	33	3.9	33	96	0	242	28	1	47	22	1.60
345797--345845	19	2.6	19	96	0	89	32	2	10	55	1.45
346211--347302	200	5.5	200	83	3	1247	36	13	17	31	1.89
346211--347302	399	2.7	400	84	6	1356	36	13	17	31	1.89
347266--347323	20	2.8	20	92	2	80	43	13	15	27	1.85
348743--348813	3	23.7	3	85	0	88	42	0	32	25	1.55
350107--350161	24	2.3	25	78	9	60	30	5	16	47	1.69
350118--350170	24	2.2	24	82	0	61	33	3	15	47	1.63
351508--352475	399	2.4	399	83	4	1202	37	13	16	32	1.88
351508--352475	200	4.9	198	83	3	1095	37	13	16	32	1.88
356296--357013	199	3.6	198	83	5	878	38	14	15	30	1.88
357034--357153	64	1.9	64	92	3	206	30	12	14	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360422--360455	15	2.3	15	94	0	59	29	0	0	70	0.87
360550--360613	31	2.1	31	82	5	76	34	4	6	54	1.46
361821--361872	13	4.0	13	89	0	77	25	23	17	34	1.96
361821--361872	26	2.0	26	96	0	95	25	23	17	34	1.96
361844--362009	85	2.0	85	89	2	253	27	19	19	32	1.97
365436--365463	3	9.3	3	100	0	56	67	0	32	0	0.91
369693--369736	9	5.5	8	80	20	56	13	0	34	52	1.41
369696--369735	16	2.5	16	95	0	71	15	0	35	50	1.44
376401--376484	42	2.0	42	97	0	159	33	17	19	29	1.95
376566--376663	22	4.5	22	92	0	160	28	20	17	33	1.95
380544--380598	20	2.6	22	86	11	80	30	20	20	29	1.97
380746--380798	22	2.5	21	84	9	63	37	11	30	20	1.88
380752--380798	22	2.2	22	88	7	71	38	12	27	21	1.90
381703--381743	19	2.2	19	100	0	82	48	4	26	19	1.69
382594--382642	23	2.1	23	92	0	80	24	24	20	30	1.98
384784--384829	23	2.0	23	100	0	92	43	26	26	4	1.73
390037--390128	41	2.2	41	86	3	132	34	17	19	28	1.94
393251--393321	2	36.5	2	94	5	128	49	0	0	50	1.00
399600--399795	87	2.3	85	82	5	223	34	23	14	27	1.94
399571--399796	43	5.2	44	80	6	214	34	23	15	26	1.95
405630--405664	13	2.7	13	83	16	54	0	22	0	77	0.78
410833--410865	15	2.1	16	94	5	59	15	6	18	60	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414184--414630	54	8.3	53	87	2	158	30	17	19	31	1.95
414209--414630	108	3.9	108	89	0	583	30	17	19	32	1.95
414209--414630	162	2.6	162	89	0	628	30	17	19	32	1.95
415071--415121	19	2.5	21	87	9	70	27	21	15	35	1.94
419116--419154	14	2.8	14	88	0	51	38	15	17	28	1.91
419584--419632	24	2.0	24	96	0	89	10	14	22	53	1.71
419590--419645	24	2.3	24	87	0	76	14	10	17	57	1.65
420713--420771	10	5.7	10	73	15	57	10	11	20	57	1.63
420719--420775	16	3.7	16	88	4	82	10	10	19	59	1.59
420836--420868	16	2.1	16	94	0	57	9	6	24	60	1.49
429514--429573	27	2.2	28	82	14	72	41	16	1	40	1.58
429833--429883	18	2.8	18	74	11	59	37	5	0	56	1.23
429955--430039	25	3.6	25	71	18	83	51	1	5	41	1.33
429961--430052	45	2.0	45	91	0	148	54	1	6	38	1.34
430217--430285	32	2.2	32	84	5	86	52	1	7	39	1.38
430691--430720	15	1.9	16	93	6	53	16	0	0	83	0.65
432064--432117	2	27.0	2	96	0	99	48	0	1	50	1.11
443526--444214	105	6.7	105	96	1	1087	33	25	18	22	1.96
444730--444759	15	1.9	16	93	6	53	16	0	0	83	0.65
446100--446141	16	2.9	14	86	10	50	45	0	0	54	0.99
446116--446148	2	16.5	2	100	0	66	51	0	0	48	1.00
448164--448199	18	2.0	18	100	0	72	44	33	5	16	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457903--457949	21	2.2	21	100	0	94	36	27	31	4	1.76
458244--458269	3	8.7	3	100	0	52	65	0	0	34	0.93
459310--459336	2	13.5	2	100	0	54	51	0	0	48	1.00
474744--475325	262	2.2	252	85	10	743	41	19	11	27	1.86
479308--479338	2	15.5	2	100	0	62	48	0	0	51	1.00
479340--479445	3	36.0	3	87	3	126	58	0	0	40	1.04
479317--479413	38	2.5	37	88	6	131	57	0	0	42	0.98
479340--479449	41	2.7	41	88	4	152	59	0	0	40	1.04
479475--480011	124	4.5	124	80	10	585	24	18	15	40	1.90
479564--480101	236	2.3	236	93	1	913	27	18	14	39	1.89

Tables:   1   2   3   4   5   6   7   8   9