genome.fa.s7851.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007851.1 Hibiscus syriacus cultivar Beakdansim tig00110210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1608033

Tables:   1   2   3   4   5   6   7   8   9   

This is table  5  of  9  ( 962 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
886565--886677	19	6.8	18	72	23	88	43	22	24	9	1.83
886689--886743	14	3.6	14	73	21	56	9	27	23	40	1.85
886864--886934	33	2.2	33	92	0	115	47	18	22	11	1.80
887116--887169	21	2.5	22	78	3	65	20	16	38	24	1.92
887315--887508	20	9.6	20	82	5	221	19	19	25	35	1.95
887315--887508	60	3.2	60	83	0	253	19	19	25	35	1.95
887501--887577	21	3.7	20	70	13	57	27	16	23	32	1.96
887563--887614	20	2.6	20	96	0	95	21	13	26	38	1.90
897707--897767	20	3.0	21	78	9	81	49	1	0	49	1.10
897693--897755	17	3.6	17	75	20	60	42	0	0	57	0.99
899087--899144	15	3.6	17	75	13	61	22	6	0	70	1.10
899862--899913	20	2.6	21	76	11	56	26	7	0	65	1.20
906710--906898	92	2.0	93	88	3	283	28	14	21	36	1.92
909202--909415	54	3.9	54	86	6	293	38	14	21	24	1.92
909202--909415	113	1.9	108	85	4	293	38	14	21	24	1.92
909773--909827	22	2.5	22	84	0	74	36	10	12	40	1.79
910506--911004	76	6.6	76	95	0	903	22	20	21	35	1.96
910506--911004	226	2.2	227	95	1	892	22	20	21	35	1.96
910946--911035	47	1.9	47	97	0	171	23	24	21	31	1.98
911177--911218	16	2.5	17	88	3	59	47	0	0	52	1.00
911157--911230	39	2.0	35	87	10	103	47	1	0	51	1.09
912574--912609	15	2.3	15	90	4	54	27	2	0	69	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
913246--913276	15	2.1	15	100	0	62	32	22	32	12	1.92
915032--915067	18	2.1	18	89	5	56	52	22	0	25	1.47
916819--916855	17	2.1	19	85	10	51	59	0	0	40	0.97
917140--917209	31	2.3	30	81	13	81	27	7	1	64	1.28
919555--919622	20	3.3	20	89	2	100	35	20	14	29	1.93
919555--919643	20	4.4	19	83	7	88	33	19	14	32	1.92
922400--922643	122	2.0	122	94	0	425	38	10	15	35	1.81
924813--924842	12	2.5	12	94	0	51	43	20	16	20	1.88
939948--939988	2	20.5	2	100	0	82	48	0	0	51	1.00
942034--942269	119	2.0	117	98	1	454	19	23	22	34	1.97
945803--945832	4	7.5	4	100	0	60	76	0	0	23	0.78
952100--952130	14	2.3	13	94	5	53	9	0	29	61	1.28
956892--956922	15	2.0	16	93	6	55	45	6	0	48	1.28
957279--957359	41	2.0	41	92	0	135	23	7	14	54	1.66
957279--957379	41	2.5	41	86	3	132	23	8	13	53	1.68
957951--958023	31	2.4	29	82	15	85	24	12	9	53	1.68
961271--961299	14	2.1	14	93	6	51	34	0	0	65	0.93
961273--961316	23	2.0	22	86	4	61	40	2	0	56	1.11
963695--963736	21	2.0	21	90	0	66	30	14	19	35	1.91
970085--970137	20	2.8	18	75	10	52	56	0	3	39	1.17
970478--970544	31	2.2	32	78	8	75	52	10	5	31	1.60
971035--971070	15	2.5	14	91	8	63	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
971737--971766	2	15.0	2	100	0	60	50	0	0	50	1.00
971787--971908	36	3.4	36	82	5	122	44	5	4	45	1.49
972548--973700	165	7.0	163	83	5	1070	25	20	23	30	1.99
972527--973716	414	2.9	409	85	3	1519	25	20	23	30	1.98
981369--981425	27	2.2	26	84	6	71	35	1	1	61	1.17
981410--981454	18	2.5	18	100	0	90	51	0	0	48	1.00
981434--981535	35	3.1	34	78	12	106	56	0	6	36	1.26
981594--981659	31	2.1	31	83	5	80	51	3	7	37	1.46
981637--981721	29	2.8	29	85	5	98	64	3	5	25	1.32
982919--982986	7	9.7	7	78	0	64	39	35	2	22	1.69
983082--983121	14	2.8	15	77	14	57	45	25	0	30	1.54
982870--983143	138	2.0	138	82	4	338	44	20	6	28	1.76
987055--987224	64	2.6	65	91	3	270	38	15	8	38	1.77
987200--987332	26	5.0	26	70	13	99	36	17	8	37	1.80
987188--987346	81	2.0	80	93	1	273	36	16	8	38	1.78
987347--987473	69	1.9	66	84	9	170	39	15	7	37	1.77
987260--987684	169	2.5	169	92	0	699	39	16	8	35	1.78
987067--987514	249	1.8	238	87	6	655	39	15	8	36	1.79
987547--987775	92	2.4	95	92	2	383	39	16	9	34	1.80
987810--987849	19	2.1	19	100	0	80	35	10	15	40	1.80
989512--989599	18	4.7	18	90	8	131	28	30	22	18	1.97
989512--989599	39	2.4	36	90	5	131	28	30	22	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
991520--991568	3	16.3	3	100	0	98	65	0	34	0	0.93
998019--998056	17	2.2	18	90	4	60	52	0	5	42	1.24
1002657--1002734	2	39.0	2	100	0	156	50	0	0	50	1.00
1007574--1007602	15	1.9	15	100	0	58	27	13	6	51	1.66
1009783--1009840	20	2.9	21	76	5	57	44	1	5	48	1.35
1012797--1012826	15	2.1	15	93	6	53	10	33	0	56	1.32
1020892--1021128	79	3.0	79	96	0	431	30	24	7	37	1.83
1024176--1024275	35	2.8	36	86	3	132	45	21	1	33	1.59
1025331--1025442	35	3.2	35	82	5	145	36	1	20	41	1.63
1026889--1027038	73	2.0	75	84	7	200	54	3	6	36	1.43
1028017--1028068	20	2.6	20	84	0	59	21	15	23	40	1.91
1045702--1046056	195	1.8	195	95	0	647	54	14	13	17	1.72
1050112--1050162	21	2.5	21	80	3	59	27	29	13	29	1.94
1054185--1054223	19	2.1	19	100	0	78	30	0	25	43	1.55
1059695--1059719	6	4.2	6	100	0	50	32	0	0	68	0.90
1070419--1070518	28	3.6	28	91	2	157	41	25	18	16	1.90
1075252--1075308	22	2.6	22	91	0	96	19	15	26	38	1.92
1076853--1077309	228	2.0	229	99	0	907	27	19	14	38	1.91
1087645--1087693	20	2.4	20	86	3	62	24	20	30	24	1.98
1087657--1087697	20	2.0	20	95	0	73	26	19	26	26	1.99
1088424--1088449	11	2.4	11	100	0	52	34	7	7	50	1.60
1094472--1094531	14	4.0	14	78	16	57	41	3	5	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1094554--1094582	14	2.1	14	100	0	58	44	0	6	48	1.29
1094632--1094674	18	2.4	17	85	14	59	32	2	4	60	1.30
1094754--1094824	22	3.0	22	73	23	63	52	1	0	46	1.09
1094805--1094849	17	2.8	16	80	6	54	44	0	0	55	0.99
1094755--1094881	11	12.4	10	65	20	50	47	1	1	49	1.20
1094884--1094938	18	3.2	17	82	7	67	43	0	1	54	1.10
1096230--1096274	21	2.1	21	91	0	72	37	2	0	60	1.09
1097733--1097792	31	1.9	31	96	0	111	28	3	1	66	1.17
1100104--1100138	14	2.6	14	90	4	54	45	28	0	25	1.54
1100114--1100147	14	2.4	14	90	0	50	47	32	0	20	1.51
1100382--1100425	13	3.8	13	72	27	53	22	25	25	27	2.00
1100375--1100427	21	2.5	21	93	0	97	22	26	24	26	2.00
1101039--1101124	23	3.7	23	76	13	86	26	25	27	19	1.99
1101366--1101428	30	2.1	30	87	0	90	33	22	6	38	1.79
1113352--1113451	42	2.4	42	88	1	139	36	23	16	25	1.94
1113466--1113629	80	2.0	80	92	0	274	29	20	16	33	1.95
1113590--1114065	42	11.0	42	65	16	193	29	21	18	30	1.97
1113540--1114171	135	4.8	135	87	5	898	29	21	17	30	1.96
1113676--1114158	257	1.9	257	93	0	833	30	21	17	31	1.96
1113987--1114059	23	3.4	22	66	17	55	34	20	19	26	1.96
1114638--1114737	42	2.4	41	76	3	110	32	22	20	26	1.98
1114882--1115006	37	3.4	37	86	1	178	27	16	21	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1115784--1115833	26	2.0	25	88	4	73	38	18	18	26	1.93
1116226--1116469	125	2.0	125	88	1	364	26	25	14	33	1.95
1117365--1117440	40	1.9	39	83	2	98	26	15	18	39	1.91
1119934--1120301	178	2.1	178	89	1	549	22	22	16	39	1.92
1127420--1127553	4	37.8	4	83	15	86	56	0	0	43	0.99
1127471--1127589	29	4.0	29	73	20	111	56	0	0	42	1.05
1127479--1127605	58	2.2	58	83	9	161	55	0	0	44	1.05
1127425--1127584	8	20.0	8	80	13	99	57	0	0	41	1.03
1127606--1127632	13	2.1	13	100	0	54	22	25	29	22	1.99
1136147--1136261	61	1.9	61	84	10	155	18	25	23	33	1.97

Tables:   1   2   3   4   5   6   7   8   9