genome.fa.s7851.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007851.1 Hibiscus syriacus cultivar Beakdansim tig00110210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1608033

Tables:   1   2   3   4   5   6   7   8   9   

This is table  7  of  9  ( 962 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1352419--1352597	32	5.6	32	76	4	137	31	12	20	35	1.90
1352425--1352595	64	2.7	64	84	3	202	31	12	20	35	1.90
1355299--1355325	14	1.9	14	100	0	54	70	0	7	22	1.12
1356270--1356314	21	2.1	21	87	0	63	46	2	0	51	1.13
1356431--1356484	27	2.0	26	86	13	74	40	1	7	50	1.41
1357147--1357193	20	2.4	19	79	10	58	53	8	17	21	1.70
1356754--1357226	180	2.6	182	88	2	700	41	13	16	28	1.86
1359446--1359510	21	3.1	21	88	0	85	43	10	27	18	1.83
1359544--1359609	33	2.0	33	93	0	114	30	0	46	22	1.52
1359797--1359862	18	3.7	18	76	17	66	53	3	42	1	1.25
1359797--1359886	33	2.6	35	80	10	121	52	2	42	3	1.30
1361437--1361485	19	2.6	19	100	0	98	30	0	10	59	1.31
1361737--1361791	21	2.6	21	100	0	110	40	16	16	27	1.89
1361758--1362720	200	4.8	200	93	1	1662	35	14	17	32	1.90
1361758--1362720	399	2.4	400	95	0	1712	35	14	17	32	1.90
1364206--1364252	12	3.9	12	94	0	76	38	8	34	19	1.82
1364204--1364252	6	8.2	6	81	0	53	40	8	32	18	1.80
1365636--1366352	184	3.9	184	96	0	1303	36	13	16	33	1.88
1369520--1369592	23	3.2	23	94	0	128	36	8	19	35	1.81
1368992--1370104	581	1.9	579	91	3	1824	41	9	10	38	1.72
1370449--1370611	87	1.9	87	94	0	290	33	13	11	42	1.79
1371173--1371306	44	3.0	43	82	4	151	29	22	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1371355--1371530	36	4.9	36	79	5	187	28	12	7	51	1.68
1371351--1371543	72	2.7	72	86	3	246	28	12	7	50	1.68
1371353--1371578	108	2.1	107	79	8	237	27	13	7	50	1.69
1371507--1371577	36	2.0	35	84	10	92	28	12	8	50	1.69
1372094--1372150	26	2.1	27	87	3	80	17	12	22	47	1.81
1372735--1372788	23	2.3	23	96	0	99	16	14	48	20	1.81
1373349--1373401	18	3.1	16	83	8	61	28	3	0	67	1.07
1380014--1380130	58	2.0	57	80	12	132	50	1	3	44	1.28
1380198--1380233	18	1.9	19	88	5	56	55	2	0	41	1.14
1380288--1380342	25	2.1	26	83	12	69	56	0	0	43	0.99
1380291--1380388	37	2.4	43	77	20	113	54	0	0	45	1.00
1380346--1380397	21	2.4	22	81	12	63	57	0	0	42	0.98
1381825--1381891	3	22.3	3	100	0	134	67	0	0	32	0.91
1385747--1385781	5	7.4	5	93	6	56	60	0	0	40	0.97
1385747--1385837	18	5.1	19	78	12	77	52	3	1	42	1.24
1385789--1385847	18	3.2	18	80	9	57	45	6	1	45	1.40
1385863--1385969	15	7.9	14	69	24	61	49	4	4	41	1.44
1385861--1386018	80	2.0	79	89	1	244	48	3	4	43	1.41
1386123--1386188	29	2.3	29	78	5	71	39	3	9	48	1.50
1386134--1386204	20	3.9	19	74	17	55	39	2	11	46	1.54
1386475--1386532	19	3.0	20	87	5	75	24	27	0	48	1.51
1386639--1386715	2	38.5	2	94	0	136	51	1	0	46	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1387160--1387196	2	18.5	2	100	0	74	48	0	0	51	1.00
1387269--1387358	46	2.0	46	84	8	121	45	0	25	28	1.54
1388835--1388861	13	2.1	13	100	0	54	29	14	33	22	1.94
1388850--1388993	64	2.2	65	82	3	184	31	18	23	27	1.97
1388981--1389034	20	2.4	23	88	11	78	31	18	24	25	1.97
1390614--1390682	23	3.0	23	78	0	84	17	23	26	33	1.96
1391480--1391510	16	1.9	16	93	0	53	41	12	25	19	1.87
1394293--1394973	347	2.0	347	94	0	1182	36	7	24	31	1.84
1395852--1395901	22	2.3	22	92	0	82	24	20	16	40	1.91
1397260--1397311	20	2.5	20	84	12	61	63	3	1	30	1.23
1407965--1408067	36	2.9	36	89	2	154	26	13	16	43	1.85
1425211--1425239	15	1.9	15	100	0	58	37	6	34	20	1.80
1427383--1427686	149	2.0	149	99	0	599	36	20	16	26	1.93
1431872--1431904	16	1.9	18	88	11	52	0	21	0	78	0.75
1440371--1440466	32	3.0	30	79	11	111	37	4	12	45	1.61
1440377--1440478	33	3.2	32	78	10	111	36	5	13	44	1.69
1440379--1440476	32	3.1	31	78	11	108	37	6	13	42	1.69
1448409--1448989	197	3.0	191	81	7	616	42	19	13	24	1.87
1457482--1457588	38	2.8	40	78	8	132	44	0	17	37	1.49
1459767--1459819	3	17.0	3	84	11	63	30	1	0	67	1.01
1464219--1464252	15	2.3	15	94	0	59	29	20	2	47	1.65
1471580--1471650	5	13.6	5	78	19	74	81	0	18	0	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1471580--1471651	26	2.8	26	95	4	128	81	0	18	0	0.68
1471580--1471652	37	2.0	37	89	5	112	80	0	19	0	0.71
1471584--1471666	6	13.5	6	73	16	64	79	0	18	2	0.84
1471580--1471652	11	6.4	11	82	14	78	80	0	19	0	0.71
1471582--1471666	26	3.5	24	78	13	77	78	0	18	2	0.85
1472008--1472045	18	2.1	18	100	0	76	31	5	5	57	1.43
1473156--1473843	123	5.7	123	88	3	977	40	15	18	25	1.90
1474206--1474247	3	14.0	3	85	9	59	30	0	2	66	1.04
1474197--1474242	21	2.2	21	84	0	56	28	0	6	65	1.17
1475720--1475752	14	2.3	15	90	10	52	30	6	6	57	1.47
1476074--1476155	40	2.1	41	84	15	111	30	3	2	63	1.24
1476513--1476565	27	2.0	27	85	7	72	58	3	0	37	1.16
1476538--1476575	19	2.1	18	90	5	58	55	0	0	44	0.99
1476538--1476587	20	2.5	20	83	3	57	52	2	0	46	1.12
1478985--1479025	20	2.1	20	90	4	66	12	7	9	70	1.33
1485047--1485086	16	2.5	16	100	0	80	45	37	5	12	1.64
1493001--1493378	125	3.0	125	88	0	506	33	16	24	25	1.96
1493852--1493897	21	2.2	21	100	0	92	41	8	32	17	1.80
1494599--1494833	36	6.5	36	84	9	223	37	22	20	19	1.94
1494586--1494833	108	2.3	108	83	4	311	37	22	19	19	1.94
1494599--1494790	72	2.7	70	84	4	258	36	24	19	18	1.94
1495204--1495643	51	8.5	51	88	6	566	32	18	24	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1495204--1495602	206	1.9	206	91	4	653	32	19	25	22	1.97
1495204--1496096	51	16.8	54	81	13	486	31	17	25	26	1.97
1495607--1495973	55	6.8	55	86	4	507	30	14	27	28	1.95
1495552--1495973	108	3.9	109	87	5	554	30	14	26	28	1.95
1496424--1496463	16	2.5	16	100	0	80	45	37	5	12	1.64
1500213--1500338	36	3.5	35	75	9	137	26	15	15	42	1.86
1500213--1500386	72	2.4	74	85	5	219	25	17	14	41	1.88
1500235--1500411	72	2.5	72	81	10	184	28	16	15	39	1.89
1500391--1500585	39	5.0	39	91	1	311	30	19	15	34	1.93
1500391--1500585	77	2.5	78	90	0	302	30	19	15	34	1.93
1500440--1500500	19	3.2	19	61	0	50	22	24	16	36	1.94
1500389--1500608	116	1.9	114	89	1	341	28	19	16	35	1.93
1500570--1500713	65	2.2	65	86	0	207	31	20	12	35	1.90
1503183--1503278	41	2.3	41	92	0	165	40	16	22	19	1.91
1503183--1503252	20	3.4	21	74	5	81	41	15	21	21	1.90
1503203--1503278	21	3.7	21	69	3	73	40	17	23	18	1.91
1503264--1503361	41	2.4	41	84	0	133	39	21	16	22	1.92
1503264--1503361	20	4.8	20	70	3	61	39	21	16	22	1.92
1503530--1503573	22	2.0	22	95	0	79	20	45	15	18	1.85
1503838--1503875	20	1.9	20	88	0	58	13	15	21	50	1.78
1505193--1505237	18	2.5	18	85	0	63	26	42	15	15	1.87
1505710--1505776	20	3.4	20	81	2	73	38	23	22	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1505765--1505822	14	3.9	14	79	16	71	50	25	15	8	1.73
1505749--1505839	32	2.8	33	91	3	157	48	23	17	10	1.79
1505710--1505844	19	7.6	19	70	19	76	43	23	20	12	1.86
1505856--1505913	14	3.9	14	79	16	71	8	17	25	48	1.75
1505851--1505929	32	2.4	33	95	2	142	10	18	24	46	1.80
1505872--1505971	19	5.5	19	75	12	77	14	21	22	43	1.87
1505914--1505968	20	2.8	19	86	5	83	18	25	21	34	1.96
1507836--1507871	14	2.6	14	90	0	54	30	0	22	47	1.52
1507978--1508054	14	4.7	15	74	22	59	45	19	22	12	1.84
1507988--1508054	18	3.8	19	81	18	92	46	17	22	13	1.83

Tables:   1   2   3   4   5   6   7   8   9