genome.fa.s7851.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007851.1 Hibiscus syriacus cultivar Beakdansim tig00110210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1608033

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 962 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1508080--1508130	20	2.5	20	93	0	84	19	23	23	33	1.97
1508497--1508532	14	2.6	14	90	0	54	30	0	22	47	1.52
1508651--1508733	18	4.8	18	87	11	120	45	18	21	14	1.84
1508620--1508733	33	3.4	33	82	11	131	42	20	22	14	1.87
1508759--1508809	20	2.5	20	93	0	84	19	23	23	33	1.97
1507586--1509342	679	2.6	676	97	1	3323	31	12	20	35	1.89
1509174--1509210	14	2.6	14	95	0	65	27	0	21	51	1.48
1510449--1510507	24	2.5	24	82	0	73	28	16	18	35	1.93
1510682--1510706	12	2.1	12	100	0	50	72	0	28	0	0.86
1513021--1513077	14	3.7	14	72	20	51	42	21	26	10	1.85
1513003--1513096	33	2.8	33	96	0	170	43	20	24	11	1.85
1512983--1513100	19	6.7	19	71	19	85	42	21	23	12	1.87
1513259--1513295	14	2.6	14	91	0	65	45	24	0	29	1.53
1514653--1514719	21	3.2	21	68	4	55	19	20	35	23	1.95
1514653--1514775	42	2.9	41	79	7	104	23	17	35	22	1.95
1516802--1516900	33	3.0	33	84	1	126	40	25	22	12	1.88
1516872--1516961	19	4.7	19	93	2	153	45	22	20	12	1.83
1516872--1516961	39	2.3	38	94	1	153	45	22	20	12	1.83
1516957--1517001	19	2.4	19	92	0	72	8	15	26	48	1.74
1517556--1517649	20	4.7	20	76	2	80	24	17	23	35	1.95
1517638--1517733	41	2.3	41	98	0	147	18	23	17	39	1.92
1517638--1517730	20	4.6	20	78	4	96	18	24	18	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1517933--1517999	31	2.1	33	86	10	95	26	7	2	62	1.36
1519249--1519307	17	3.6	16	75	20	50	18	6	5	69	1.30
1523611--1523644	15	2.4	15	90	9	54	44	0	29	26	1.55
1524610--1524648	3	13.0	3	100	0	78	66	0	0	33	0.92
1525184--1525254	15	4.7	15	80	3	81	30	1	40	26	1.65
1525180--1525254	30	2.5	30	89	4	107	30	1	41	26	1.64
1525310--1525375	15	4.4	15	90	0	105	31	0	40	27	1.56
1525186--1525592	129	3.0	129	84	8	456	23	8	29	38	1.84
1526624--1526668	3	15.0	3	100	0	90	66	0	0	33	0.92
1528009--1528071	33	1.9	33	87	6	92	15	12	34	36	1.86
1528189--1528265	15	5.1	15	82	6	93	27	1	44	27	1.62
1528109--1528474	147	2.7	132	81	12	489	20	9	30	40	1.83
1528321--1528412	15	6.1	15	79	5	87	30	2	40	27	1.68
1528327--1528413	30	2.9	30	84	3	113	33	2	37	26	1.69
1530225--1530277	15	3.5	15	92	0	79	9	66	16	7	1.43
1535035--1535064	15	2.0	15	100	0	60	13	33	13	40	1.83
1535597--1535810	18	11.7	18	82	4	250	27	16	11	44	1.82
1535600--1535645	21	2.2	21	88	7	67	36	13	8	41	1.75
1535621--1535810	18	10.6	18	84	0	254	25	16	12	45	1.82
1537033--1537079	3	15.7	3	90	0	76	31	63	0	4	1.13
1539320--1539358	3	13.0	3	100	0	78	66	0	0	33	0.92
1540828--1540852	7	3.6	7	100	0	50	12	0	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1542291--1542320	3	10.0	3	92	0	51	66	3	0	30	1.07
1542425--1542538	56	2.0	56	88	6	167	55	5	7	32	1.49
1542450--1542534	28	3.1	27	64	18	66	52	5	7	34	1.53
1543059--1543088	12	2.5	12	100	0	60	6	16	16	60	1.56
1543817--1543908	15	6.1	14	75	9	67	30	1	38	30	1.65
1543817--1543908	30	3.1	30	78	6	96	30	1	38	30	1.65
1547261--1547539	149	1.9	148	79	5	321	37	16	23	23	1.93
1551197--1551313	36	3.1	36	68	14	110	31	14	11	41	1.82
1551197--1551326	37	3.5	37	68	14	97	33	14	13	38	1.85
1551116--1551353	76	3.1	75	87	5	345	32	15	13	39	1.85
1551358--1551867	39	13.2	39	74	7	285	30	16	14	37	1.89
1551426--1551609	40	4.7	39	74	7	140	34	17	14	33	1.90
1551499--1551634	40	3.4	39	72	7	121	37	14	12	35	1.84
1551475--1551698	80	2.9	76	85	5	254	33	14	13	38	1.85
1551205--1551858	345	1.9	344	89	1	1013	31	16	14	37	1.89
1551909--1552011	42	2.5	40	85	7	143	25	25	18	31	1.98
1551905--1551980	20	3.7	20	70	16	57	23	25	18	32	1.97
1551909--1552029	41	2.9	40	84	6	143	23	24	20	30	1.99
1553700--1553764	8	8.0	8	78	11	53	29	3	0	67	1.05
1553736--1553773	16	2.4	16	90	0	58	26	2	0	71	1.00
1553703--1553764	7	8.7	7	78	18	58	27	3	0	69	1.04
1554324--1554488	76	2.2	76	81	2	197	27	25	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1560250--1560336	23	4.0	22	82	7	88	22	31	24	21	1.99
1562844--1562989	76	1.9	76	88	0	220	26	25	21	26	2.00
1564461--1564531	15	4.7	15	80	3	81	30	1	40	26	1.65
1564457--1564531	30	2.5	30	89	4	107	30	1	41	26	1.64
1564587--1564652	15	4.4	15	90	0	105	31	0	40	27	1.56
1564463--1564774	129	2.4	130	87	4	425	24	7	30	37	1.82
1564734--1564775	15	2.8	16	78	10	52	35	2	35	26	1.70
1565902--1565958	3	19.0	3	100	0	114	66	0	0	33	0.92
1567479--1567570	30	3.1	30	85	3	114	28	1	43	27	1.62
1567479--1567570	45	2.0	45	83	4	114	28	1	43	27	1.62
1567392--1567776	147	2.6	147	88	2	560	20	9	30	40	1.83
1567479--1567552	15	4.9	15	88	6	105	29	1	40	28	1.65
1567500--1567567	15	4.5	15	92	0	55	32	0	42	25	1.55
1567626--1567708	15	5.5	15	77	5	78	30	3	38	27	1.74
1567629--1567705	30	2.6	30	79	6	102	32	3	36	27	1.75
1569531--1569597	15	4.5	15	88	0	98	8	65	16	8	1.45
1573226--1573258	3	11.0	3	100	0	66	66	0	0	33	0.92
1574998--1575022	7	3.6	7	100	0	50	12	0	0	88	0.53
1576462--1576500	3	13.0	3	100	0	78	66	0	0	33	0.92
1576606--1576719	56	2.0	56	88	6	167	55	5	7	32	1.49
1576631--1576715	28	3.1	27	64	18	66	52	5	7	34	1.53
1577987--1578064	30	2.6	30	78	6	86	32	1	35	30	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1578008--1578057	15	3.3	15	78	15	59	34	2	36	28	1.69
1580944--1581222	149	1.9	148	80	5	330	37	16	22	24	1.93
1584882--1584998	36	3.1	36	70	13	110	31	15	11	41	1.82
1584882--1585011	37	3.5	37	70	13	104	33	15	12	38	1.85
1584895--1585660	39	20.0	39	71	12	146	31	17	14	37	1.89
1584801--1585038	76	3.1	75	86	5	345	32	15	12	39	1.85
1585043--1585669	39	16.2	39	77	5	456	30	17	14	37	1.90
1585160--1585383	80	2.9	77	85	5	290	31	16	13	38	1.87
1585160--1585383	76	2.9	77	86	4	290	31	16	13	38	1.87
1584828--1585543	345	2.1	345	87	3	1009	31	16	13	37	1.88
1585711--1585813	42	2.5	42	82	7	138	26	24	18	31	1.98
1585711--1585831	41	2.9	40	82	3	134	24	23	20	30	1.99
1588123--1588287	76	2.2	76	82	4	208	27	26	22	24	2.00
1594032--1594077	22	2.0	23	91	4	76	21	30	26	21	1.99
1594039--1594118	23	3.7	21	77	12	67	23	31	21	23	1.98
1594575--1594609	13	2.7	13	86	0	52	34	20	2	42	1.66
1596454--1596491	19	2.0	20	89	5	60	42	0	2	55	1.14
1596685--1596724	21	1.9	21	89	0	62	25	35	20	20	1.96
1596632--1596779	76	1.9	76	86	0	206	26	27	21	25	1.99
1598249--1598319	15	4.7	15	80	3	81	30	1	40	26	1.65
1598245--1598319	30	2.5	30	89	4	107	30	1	41	26	1.64
1598375--1598470	15	6.4	15	91	0	156	32	0	39	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1598396--1598683	147	2.0	145	83	4	366	24	7	30	37	1.82
1598249--1598683	159	2.8	158	83	7	502	24	7	31	37	1.83
1598552--1598593	15	2.8	16	78	10	52	35	2	35	26	1.70
1599719--1599757	3	13.0	3	100	0	78	66	0	0	33	0.92
1601298--1601389	30	3.1	30	85	3	114	28	1	43	27	1.62
1601298--1601389	45	2.0	45	83	4	114	28	1	43	27	1.62
1601298--1601371	15	4.9	15	88	6	105	29	1	40	28	1.65
1601319--1601386	15	4.5	15	92	0	55	32	0	42	25	1.55
1601211--1601598	147	2.6	147	88	1	564	20	9	30	39	1.84
1601445--1601536	15	6.1	15	78	5	87	30	2	40	27	1.68

Tables:   1   2   3   4   5   6   7   8   9