genome.fa.s7888.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007888.1 Hibiscus syriacus cultivar Beakdansim tig00110270_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1558302

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312308--312441	41	3.3	40	75	7	126	28	17	23	31	1.97
312161--312441	82	3.4	82	77	9	270	31	14	21	32	1.94
312859--312907	22	2.2	22	85	0	62	40	10	10	38	1.73
316438--316474	18	2.1	18	89	0	56	29	8	18	43	1.79
317816--317846	14	2.3	14	94	5	55	35	25	3	35	1.72
322238--322268	14	2.3	14	94	5	55	35	25	3	35	1.72
323726--323765	18	2.3	18	86	4	55	35	2	15	47	1.58
329706--329975	44	6.2	44	90	0	409	27	24	18	29	1.98
332500--332561	31	2.2	28	83	13	74	29	29	22	19	1.98
333760--333839	31	2.6	31	85	0	97	41	6	12	40	1.68
337232--337274	20	2.2	20	91	0	68	37	25	27	9	1.87
337232--337296	11	6.4	11	68	22	52	33	26	30	9	1.88
346607--346721	60	1.9	60	87	3	169	31	22	5	40	1.76
346610--346749	60	2.3	60	82	9	153	32	22	5	38	1.78
346879--347030	60	2.5	60	82	8	175	42	4	23	29	1.74
347332--347436	31	3.4	31	74	7	106	37	15	20	27	1.92
348588--348706	60	2.0	59	83	6	150	30	16	17	35	1.93
349364--349425	22	2.7	22	72	7	61	29	3	3	64	1.25
351089--351140	15	3.4	15	73	5	59	55	7	1	34	1.39
351074--351155	31	2.6	31	98	1	155	52	4	3	39	1.41
351068--351173	16	6.7	16	70	8	83	52	3	2	40	1.34
357462--357706	51	4.8	50	81	5	276	23	11	16	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357479--357708	101	2.3	102	87	2	320	22	10	16	50	1.76
357751--357816	29	2.3	29	100	0	132	39	19	13	27	1.89
358269--358299	16	1.9	16	93	0	53	22	0	6	70	1.09
360227--360259	5	6.6	5	100	0	66	60	0	0	39	0.97
363944--363994	25	2.0	25	85	7	68	47	0	5	47	1.26
363923--363959	2	19.0	2	94	5	67	48	0	0	51	1.00
363960--364326	36	10.0	36	83	7	420	45	2	5	46	1.40
364330--364355	3	8.7	3	100	0	52	30	0	0	69	0.89
364329--364385	18	3.2	18	77	20	57	21	5	0	73	1.02
365441--365483	16	2.7	15	92	3	68	25	2	0	72	0.97
365431--365483	4	13.0	4	79	16	56	26	1	0	71	0.96
365592--365635	22	2.0	22	82	8	54	9	15	9	65	1.45
365608--365674	22	3.0	22	80	8	64	10	8	4	76	1.15
366676--366748	38	1.9	37	88	2	110	28	8	36	26	1.85
368613--368660	23	2.1	22	85	11	62	64	0	4	31	1.12
368674--368732	18	3.2	18	81	11	75	81	0	3	15	0.82
368674--368724	6	8.7	6	76	20	54	82	0	1	15	0.76
368713--368763	24	2.2	23	82	3	57	68	3	13	13	1.34
370064--370097	2	17.0	2	93	0	59	47	0	2	50	1.16
370028--370133	56	1.9	55	90	5	169	43	1	3	50	1.30
370085--370236	34	4.4	34	90	7	227	44	4	3	46	1.42
370223--370283	2	32.0	2	88	9	92	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371508--371532	7	3.6	7	100	0	50	88	0	0	12	0.53
371491--371537	9	5.1	9	77	12	51	82	2	2	12	0.84
371518--371570	28	1.9	27	84	3	70	71	3	9	15	1.26
372779--372823	18	2.4	18	81	7	54	77	0	6	15	0.96
372827--373110	39	7.7	35	81	9	277	45	6	3	44	1.45
372862--373110	115	2.2	105	81	13	293	44	6	3	45	1.45
372955--373106	34	4.3	34	84	10	182	44	5	3	46	1.46
373096--373124	2	14.5	2	100	0	58	48	0	0	51	1.00
372838--373195	121	3.0	116	81	9	372	46	6	3	44	1.44
373109--373195	36	2.4	36	85	10	117	45	5	2	45	1.39
373046--373220	85	2.1	85	86	6	239	48	6	2	43	1.41
373315--373352	15	2.4	16	86	4	51	57	0	0	42	0.98
373327--373366	21	2.0	20	90	5	62	47	2	2	47	1.29
374035--374059	13	1.9	13	100	0	50	56	0	8	36	1.29
374336--374375	19	2.1	19	86	13	55	40	7	2	50	1.44
374454--374516	25	2.3	26	73	10	65	47	3	4	44	1.40
378997--379164	60	2.8	60	78	8	207	42	5	19	33	1.74
379251--379297	2	23.5	2	100	0	94	51	0	0	48	1.00
380559--380600	10	4.2	10	81	6	50	30	0	2	66	1.04
381059--381097	18	2.2	18	86	9	53	46	2	0	51	1.14
381356--381384	12	2.4	12	100	0	58	34	6	0	58	1.25
381890--382013	64	2.0	64	91	1	205	54	8	4	32	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384269--384311	15	2.7	16	82	17	54	34	4	0	60	1.17
384657--384695	21	1.9	19	85	10	51	51	2	2	43	1.29
386518--386569	24	2.2	24	82	6	61	21	3	5	69	1.26
386994--387033	21	1.9	21	100	0	80	40	15	25	20	1.90
387225--387277	2	26.5	2	100	0	106	50	0	0	49	1.00
390573--390602	15	2.0	15	93	0	51	56	0	0	43	0.99
393343--393381	17	2.3	17	82	8	53	61	0	0	38	0.96
393366--393390	11	2.3	11	100	0	50	68	0	0	32	0.90
393380--393755	142	2.6	142	81	9	403	47	6	7	39	1.57
393630--393658	2	14.5	2	100	0	58	51	0	0	48	1.00
395045--395125	3	26.0	3	87	5	92	59	0	0	40	0.98
395248--396043	76	10.5	76	95	0	1385	34	21	19	24	1.96
396707--396786	22	3.6	22	75	18	85	37	12	16	33	1.86
401577--401626	1	50.0	1	91	0	82	0	4	0	96	0.24
404157--404232	37	2.1	36	85	2	98	59	9	14	17	1.60
407050--407088	17	2.3	17	86	0	60	58	0	0	41	0.98
407217--407450	130	1.8	129	91	2	389	47	7	7	38	1.60
413653--413852	6	33.3	6	98	0	337	37	0	46	16	1.47
420105--420139	6	5.8	6	100	0	70	17	0	65	17	1.27
422771--422840	21	3.3	21	79	0	77	11	40	17	31	1.85
422905--422952	21	2.3	21	85	7	62	4	33	10	52	1.55
424146--424178	3	11.0	3	100	0	66	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425912--425992	27	2.9	27	76	18	92	28	22	12	37	1.90
426185--426221	3	12.3	3	88	11	58	64	0	0	35	0.94
428406--428442	14	2.6	14	91	0	56	62	16	10	10	1.55
429499--429684	20	9.3	20	87	4	277	40	19	18	21	1.91
429678--429764	20	4.3	20	91	2	131	32	25	18	24	1.97
430606--430659	24	2.2	24	93	0	90	20	18	20	40	1.91
432793--432838	20	2.3	20	100	0	92	47	0	30	21	1.51
433646--433855	103	2.0	103	98	0	402	26	12	23	36	1.91
433874--433919	23	2.0	23	86	0	65	23	21	26	28	1.99
434243--434290	20	2.4	20	100	0	96	29	0	25	45	1.53
437489--437567	22	3.7	22	91	5	126	30	22	25	21	1.99
437602--437646	22	2.0	22	86	4	63	28	31	26	13	1.94
438080--438125	20	2.3	20	96	0	83	45	0	32	21	1.52
438930--439142	103	2.1	103	94	0	372	26	13	23	36	1.92
439159--439226	23	3.0	23	86	0	91	20	26	26	26	1.99
441181--441273	20	4.7	19	89	5	141	36	24	21	17	1.94
441181--441273	39	2.3	40	92	5	154	36	24	21	17	1.94
441265--441318	14	3.5	14	73	22	54	44	20	24	11	1.83
441256--441340	33	2.5	33	94	1	143	44	18	23	12	1.85
441377--441430	14	3.5	14	73	22	54	11	24	20	44	1.83
441355--441450	33	2.9	34	90	3	149	12	23	20	42	1.86
441556--441592	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443115--443160	23	2.0	23	91	0	74	28	26	23	21	1.99
443748--443906	63	2.5	63	86	2	203	25	22	19	32	1.98
443874--443911	19	2.0	20	94	5	69	26	28	15	28	1.96
450007--450052	23	2.0	23	91	0	74	28	26	23	21	1.99
450031--450323	147	2.0	147	96	2	545	35	20	15	27	1.93
450785--450943	63	2.5	63	84	2	194	26	22	18	32	1.97
450911--450948	19	2.0	20	94	5	69	26	28	15	28	1.96
452171--452278	42	2.6	42	79	5	121	22	17	37	22	1.94
452762--452964	20	10.4	20	81	8	193	36	22	21	20	1.95
452863--452983	34	3.3	34	76	16	143	35	21	23	19	1.96

Tables:   1   2   3   4   5   6   7