genome.fa.s7888.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007888.1 Hibiscus syriacus cultivar Beakdansim tig00110270_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1558302

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905967--906055	30	3.0	30	91	1	135	31	26	21	20	1.98
906051--906151	31	3.2	31	80	8	132	33	18	18	28	1.95
906453--906492	21	1.9	21	84	0	53	27	20	2	50	1.61
906894--906949	29	1.9	29	82	7	69	44	23	1	30	1.63
907339--907383	21	2.1	21	87	0	63	15	24	28	31	1.96
910517--910605	30	3.0	30	91	1	135	31	26	21	20	1.98
910601--910701	31	3.2	31	78	8	123	34	17	17	29	1.94
910604--910700	32	3.1	32	79	7	117	36	17	16	29	1.92
911447--911502	29	1.9	29	82	7	69	44	23	1	30	1.63
911891--911935	21	2.1	21	91	0	72	15	22	28	33	1.95
915681--915887	19	10.4	19	68	21	79	75	1	6	16	1.07
915671--915772	31	3.3	30	71	22	86	74	0	5	18	1.07
915683--915858	50	3.5	53	71	15	142	75	1	5	17	1.06
915688--915887	10	18.8	10	69	19	102	76	1	6	16	1.03
917602--917626	11	2.3	11	100	0	50	32	8	24	36	1.84
917873--918590	227	3.1	228	96	1	1341	44	7	8	39	1.62
918639--918685	20	2.4	19	89	10	76	55	10	17	17	1.69
918820--918866	20	2.4	19	82	10	67	53	10	17	19	1.72
918829--918871	20	2.3	19	88	11	63	51	11	16	20	1.75
921087--921130	21	2.1	21	91	0	70	40	11	31	15	1.83
921164--921229	33	2.0	33	90	0	105	28	0	48	22	1.51
923019--923067	19	2.6	19	93	0	80	30	2	10	57	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
923186--924154	199	4.9	200	96	0	1768	36	14	17	31	1.90
925621--925724	6	17.3	6	79	0	82	37	6	34	21	1.80
925636--925728	3	31.0	3	76	0	87	36	5	34	23	1.78
925621--925724	18	5.8	18	79	0	91	37	6	34	21	1.80
925624--925724	12	8.4	12	84	0	103	36	6	34	21	1.81
927223--927712	182	2.7	182	92	3	808	34	14	16	33	1.90
930177--930236	25	2.4	25	88	0	84	33	8	15	43	1.76
930583--930655	23	3.2	23	84	0	92	35	4	20	39	1.72
931083--931119	18	2.1	18	89	0	56	32	5	10	51	1.60
931075--931121	24	2.0	24	86	0	67	34	4	14	46	1.64
931378--931464	39	2.2	39	89	0	138	49	19	12	18	1.79
931881--931953	23	3.2	23	88	0	101	34	4	21	39	1.73
932309--932381	23	3.2	23	88	0	101	34	4	21	39	1.73
931680--932729	427	2.5	428	98	0	2027	41	7	12	38	1.71
942490--942526	19	1.9	19	94	0	65	21	27	18	32	1.97
942516--942602	19	4.2	20	80	13	106	20	21	25	32	1.98
942516--942602	42	2.1	41	89	4	140	20	21	25	32	1.98
942694--942718	6	4.2	6	100	0	50	32	52	16	0	1.44
943360--943400	21	2.0	21	90	0	64	4	24	29	41	1.75
943502--943573	21	3.4	21	70	21	69	37	18	18	26	1.93
943498--943594	42	2.3	42	90	0	149	35	20	18	25	1.95
943565--943618	21	2.6	21	90	0	81	29	27	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
947101--947131	2	15.5	2	100	0	62	51	0	0	48	1.00
948837--948919	18	4.4	19	68	24	52	50	7	6	36	1.55
955065--955090	2	13.0	2	100	0	52	50	0	50	0	1.00
957106--957131	5	5.2	5	100	0	52	19	0	0	80	0.71
959392--959428	6	6.3	6	96	3	67	51	13	35	0	1.41
961200--961332	68	1.9	70	92	7	227	36	17	19	27	1.94
963161--963635	125	3.8	126	94	3	854	22	25	19	32	1.97
964012--964114	32	3.2	33	81	12	131	37	2	4	54	1.37
964052--964115	30	2.2	28	81	10	67	37	1	4	56	1.30
964620--964712	21	4.5	21	86	10	120	20	26	34	18	1.96
964716--964763	21	2.3	21	85	0	60	22	12	39	25	1.89
966476--966560	34	2.5	34	84	7	102	58	2	0	38	1.11
966510--966568	16	3.7	15	72	14	55	64	3	0	32	1.10
978914--978948	18	1.9	18	88	0	52	37	0	2	60	1.12
978901--978957	30	1.9	30	85	7	80	35	1	3	59	1.25
979046--979100	22	2.4	22	82	11	58	58	0	0	41	0.98
979100--979126	10	2.7	10	100	0	54	33	0	11	55	1.35
979112--979160	22	2.1	23	81	7	55	36	2	4	57	1.30
979194--979219	2	13.0	2	100	0	52	50	0	0	50	1.00
990017--990382	181	2.0	183	98	1	718	37	12	10	39	1.78
993007--993046	20	2.0	20	90	0	62	62	12	2	22	1.42
996333--996362	15	2.0	15	93	0	51	13	10	26	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1000313--1000384	26	3.0	24	68	27	62	62	4	6	26	1.39
1002583--1002623	18	2.3	18	87	4	57	60	2	7	29	1.36
1006062--1006112	25	2.0	25	100	0	102	27	23	7	41	1.82
1011331--1011365	18	1.9	18	88	0	52	34	17	0	48	1.47
1012337--1012382	10	4.7	10	79	10	51	26	26	32	15	1.95
1012337--1012382	19	2.3	20	89	10	69	26	26	32	15	1.95
1016651--1016707	26	2.3	24	82	11	62	36	7	3	52	1.46
1017786--1017855	35	2.0	35	94	0	122	50	18	10	21	1.76
1020040--1020087	12	4.0	12	78	10	53	43	18	14	22	1.87
1024109--1024149	20	2.1	20	86	4	57	53	2	0	43	1.13
1025818--1027061	623	2.0	621	99	0	2438	31	22	16	29	1.96
1032815--1032839	11	2.3	11	100	0	50	0	16	28	56	1.41
1042922--1043121	26	7.7	27	73	17	95	43	0	1	55	1.09
1042965--1043065	26	4.0	26	81	12	104	42	0	1	55	1.11
1042925--1043096	90	1.9	85	82	12	204	43	0	1	55	1.07
1042899--1043122	64	3.5	64	95	2	396	42	0	1	55	1.10
1043117--1043178	19	3.3	19	78	15	58	37	1	0	61	1.06
1043785--1043844	31	1.9	31	93	0	102	43	10	6	40	1.64
1047871--1047903	13	2.5	13	86	13	50	84	0	15	0	0.61
1052274--1052304	3	10.3	3	100	0	62	32	0	0	67	0.91
1053449--1053517	32	2.2	32	87	7	97	50	10	21	17	1.75
1059092--1059190	50	2.0	49	96	2	180	32	16	14	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1065616--1065743	61	2.1	60	95	1	229	31	18	16	33	1.93
1076480--1076505	11	2.4	11	100	0	52	46	0	0	53	1.00
1077073--1077111	17	2.2	18	86	4	53	30	0	2	66	1.05
1077088--1077150	28	2.2	30	80	8	76	39	4	1	53	1.31
1086776--1086832	27	2.2	25	87	9	80	54	0	3	42	1.17
1086776--1086871	25	3.6	27	72	18	85	51	2	3	43	1.29
1090609--1090652	18	2.4	18	100	0	88	59	6	6	27	1.49
1093679--1093721	18	2.4	18	92	0	68	62	16	6	13	1.51
1095504--1095529	10	2.6	10	100	0	52	69	7	7	15	1.35
1096265--1096390	36	3.6	33	73	9	108	49	7	9	33	1.64
1097159--1098001	421	2.0	421	96	0	1551	27	17	14	40	1.88
1100168--1100205	20	1.9	20	88	0	58	21	26	10	42	1.85
1100991--1101116	60	2.1	60	81	10	150	38	5	24	31	1.79
1107872--1107920	21	2.3	21	92	0	80	18	16	30	34	1.93
1107892--1108026	42	3.2	41	82	4	153	24	7	21	46	1.76
1108714--1108791	37	2.1	37	83	11	97	46	1	5	47	1.33
1110201--1110235	2	17.5	2	100	0	70	51	0	0	48	1.00
1115905--1115954	25	2.0	26	88	4	75	20	28	20	32	1.97
1118740--1118789	17	3.1	17	68	26	54	52	22	6	20	1.68
1120625--1120667	4	10.8	4	94	0	77	27	0	0	72	0.85
1122384--1122448	29	2.2	28	84	7	85	47	0	24	27	1.52
1122394--1122455	29	2.1	29	82	5	72	46	1	25	25	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1128685--1128737	21	2.5	22	84	6	74	22	24	18	33	1.97
1128723--1128819	20	4.8	20	93	0	167	41	19	18	20	1.91
1128806--1128892	20	4.3	20	92	0	138	29	26	19	24	1.98
1129734--1129787	24	2.2	24	96	0	99	20	16	20	42	1.89
1136361--1136397	14	2.4	16	91	8	60	45	2	43	8	1.47
1154538--1154631	31	3.0	32	74	10	95	47	7	5	39	1.54
1156659--1156721	28	2.4	26	78	17	67	12	20	4	61	1.49
1157904--1157957	20	2.7	19	80	11	63	79	1	7	11	1.00
1157903--1157959	15	3.8	15	72	6	53	78	1	7	12	1.01
1160778--1160854	31	2.5	32	77	10	88	46	7	3	41	1.51

Tables:   1   2   3   4   5   6   7