genome.fa.s7888.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007888.1 Hibiscus syriacus cultivar Beakdansim tig00110270_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1558302

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1422412--1422465	24	2.2	24	86	0	72	38	22	14	24	1.91
1423152--1423287	70	1.9	70	95	0	245	27	19	23	28	1.99
1423555--1423612	20	2.9	20	94	0	98	37	22	22	17	1.93
1423636--1423707	14	4.5	15	73	21	58	12	22	18	47	1.81
1423631--1423697	18	3.9	18	83	14	88	13	23	16	46	1.82
1425685--1425730	21	2.4	19	89	10	67	34	26	23	15	1.94
1425737--1425794	14	3.9	14	77	16	62	48	24	17	10	1.78
1425683--1425780	18	5.6	18	75	16	73	41	24	21	12	1.87
1425724--1425799	32	2.5	30	91	4	116	47	23	18	10	1.79
1425806--1425901	19	5.7	18	70	20	82	12	19	19	47	1.81
1425828--1425885	14	3.9	14	77	16	62	10	18	20	50	1.76
1425811--1425901	32	2.8	33	88	3	139	12	18	19	49	1.79
1425886--1425940	20	2.8	19	83	8	65	16	23	23	36	1.94
1426412--1426456	18	2.5	18	88	0	72	13	15	44	26	1.83
1427726--1427779	20	2.8	20	80	2	65	48	22	16	12	1.80
1427993--1428032	21	1.9	21	89	0	62	17	12	45	25	1.83
1428215--1428309	20	4.7	20	80	2	91	23	17	24	34	1.96
1428298--1428390	20	4.5	21	75	4	91	18	24	17	39	1.91
1428237--1428371	41	3.3	41	81	4	130	20	21	20	38	1.94
1428301--1428390	41	2.2	41	97	0	171	18	24	16	40	1.91
1441063--1441101	20	1.9	21	84	5	53	46	10	20	23	1.81
1446631--1446668	21	1.9	20	89	10	60	55	10	7	26	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1451047--1451120	37	2.1	36	87	7	107	25	5	2	66	1.27
1451114--1451167	24	2.2	24	83	9	65	22	3	0	74	0.98
1451364--1451389	3	8.7	3	100	0	52	30	0	0	69	0.89
1451379--1451437	25	2.3	25	80	8	66	16	5	5	72	1.20
1454183--1454235	22	2.4	22	100	0	106	58	9	24	7	1.55
1454668--1454706	20	2.0	20	90	9	64	15	7	5	71	1.26
1460212--1460280	23	3.0	23	86	0	93	28	26	24	20	1.99
1465055--1465099	21	2.1	21	87	0	63	15	24	28	31	1.96
1470157--1470195	16	2.4	16	91	4	60	82	5	12	0	0.83
1471112--1471318	110	1.9	110	89	0	324	35	23	19	22	1.96
1472826--1472887	16	3.5	16	75	23	61	30	6	1	61	1.31
1472822--1472879	17	3.2	17	74	25	64	34	5	1	58	1.30
1473937--1474066	24	5.5	24	88	1	172	55	17	16	10	1.69
1475482--1475540	29	2.0	29	96	0	109	22	13	15	49	1.79
1480488--1480546	29	2.0	29	93	0	100	22	11	15	50	1.76
1487783--1487839	26	2.2	26	90	0	87	15	8	26	49	1.74
1510705--1510750	15	3.2	15	90	6	69	65	0	0	34	0.93
1510691--1510758	15	5.1	14	72	20	65	67	0	1	30	0.99
1516258--1516294	18	2.1	18	90	10	58	59	8	0	32	1.27
1517958--1518044	42	2.1	42	91	2	140	43	1	5	49	1.34
1517975--1518061	15	6.1	15	75	14	85	41	0	3	55	1.17
1518716--1518873	21	7.8	20	72	7	86	38	25	17	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1518840--1519189	20	17.5	20	87	1	414	37	24	17	20	1.93
1518840--1519189	40	8.8	40	92	3	465	37	24	17	20	1.93
1519872--1519918	24	2.0	24	83	8	60	27	14	19	38	1.91
1522350--1522514	33	4.7	34	81	13	183	46	18	21	13	1.83
1522364--1522543	19	10.2	19	77	18	210	46	17	20	15	1.84
1522350--1522552	52	3.9	52	85	10	272	45	18	21	14	1.85
1522561--1522657	18	5.4	19	82	15	134	14	22	17	45	1.85
1522545--1522657	53	2.2	51	95	3	199	14	24	17	43	1.86
1522764--1522800	14	2.6	14	91	0	65	45	21	0	32	1.52
1524781--1524837	14	3.7	14	77	20	60	45	22	21	10	1.82
1524762--1524854	33	2.8	33	95	0	168	47	21	20	10	1.80
1524725--1524859	19	7.6	19	76	16	128	45	23	19	11	1.82
1524855--1524983	19	7.3	19	75	17	125	8	17	28	45	1.77
1524855--1524946	33	2.8	33	93	3	150	7	18	28	45	1.76
1525031--1525499	93	5.1	93	99	0	922	46	19	12	21	1.83
1527202--1527299	14	6.3	14	69	21	61	45	21	22	10	1.81
1527197--1527311	33	3.5	33	95	0	212	46	20	21	11	1.81
1527219--1527316	19	5.7	19	69	22	90	44	21	21	12	1.84
1527328--1527384	14	3.7	14	75	20	60	8	24	22	43	1.81
1527312--1527392	33	2.5	33	95	0	144	8	22	22	46	1.78
1527369--1527444	21	3.7	21	83	3	109	11	25	17	46	1.82
1527368--1527445	41	1.9	41	97	0	147	12	25	16	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1527524--1527594	33	2.2	33	89	0	106	49	18	21	11	1.78
1527776--1527830	22	2.5	22	81	0	74	20	16	40	23	1.91
1527977--1528130	20	7.7	20	80	7	159	18	18	25	37	1.94
1527976--1528130	40	3.8	40	81	4	177	18	18	25	37	1.93
1528117--1528199	21	4.0	21	73	6	78	25	16	24	33	1.96
1528097--1528195	42	2.4	43	77	11	100	21	18	23	37	1.94
1531026--1531073	18	2.6	17	78	15	51	70	8	4	16	1.27
1531128--1531160	16	2.0	17	88	5	50	72	6	6	15	1.24
1536722--1536753	10	3.2	10	100	0	64	50	0	9	40	1.35
1538145--1538202	19	2.9	19	80	14	64	79	1	12	6	1.00
1538299--1538323	10	2.5	10	100	0	50	64	0	8	28	1.22
1538338--1538394	2	28.5	2	100	0	114	50	0	0	49	1.00
1538410--1538463	24	2.2	25	86	3	74	64	0	7	27	1.20
1539744--1539960	106	2.0	106	84	1	283	21	19	25	33	1.97
1540024--1540265	99	2.4	99	82	4	286	22	19	23	34	1.96
1540712--1540738	14	1.9	14	100	0	54	22	18	22	37	1.95
1546803--1546847	22	2.0	22	100	0	90	31	17	17	33	1.94
1547216--1547257	22	2.0	22	85	4	59	26	30	21	21	1.98
1550713--1550766	27	2.0	27	96	0	99	14	18	38	27	1.90
1552023--1552065	19	2.3	19	83	0	59	65	0	16	18	1.28

Tables:   1   2   3   4   5   6   7

The End!