genome.fa.s7888.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007888.1 Hibiscus syriacus cultivar Beakdansim tig00110270_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1558302

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452822--452982	76	2.1	76	93	2	272	34	21	23	20	1.97
453011--453120	20	5.5	20	91	0	166	20	18	21	39	1.93
453237--453277	21	1.9	21	85	5	55	43	14	14	26	1.84
454866--454948	19	4.4	19	83	1	87	44	24	16	14	1.85
455285--455350	22	3.0	22	86	0	96	21	15	37	25	1.92
455566--455618	21	2.5	21	84	0	70	35	16	24	22	1.95
455793--455868	31	2.5	31	85	6	93	27	10	10	51	1.69
456128--456152	13	1.9	13	100	0	50	24	0	12	64	1.27
456171--456213	22	2.0	22	81	9	52	39	2	4	53	1.34
458859--459021	80	2.0	81	95	1	292	46	11	6	36	1.64
459066--459115	16	3.0	16	77	11	55	22	4	14	60	1.51
459066--459109	18	2.6	17	85	7	54	20	2	15	61	1.45
462243--462316	34	2.2	34	92	4	123	35	8	25	31	1.85
463141--463325	68	2.6	71	84	3	241	24	14	24	36	1.92
473977--474056	21	3.7	22	93	5	137	40	5	11	43	1.62
474172--474341	20	8.6	19	81	7	105	36	21	15	27	1.93
474176--474239	20	3.2	20	95	2	112	31	21	23	23	1.99
474262--474340	19	4.1	19	80	6	88	35	22	10	31	1.88
474496--474534	16	2.5	15	88	8	60	28	2	0	69	1.02
475286--475338	24	2.3	23	90	3	79	20	16	20	41	1.90
477862--477919	29	2.0	29	89	0	89	34	20	15	29	1.94
477909--477947	20	2.0	20	94	0	69	20	20	17	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479618--479655	20	1.9	20	94	0	67	18	18	21	42	1.90
479658--479749	34	2.7	34	82	0	112	33	20	18	27	1.96
479814--479971	64	2.5	64	95	1	280	51	17	1	29	1.56
481312--481451	21	6.7	21	80	5	140	25	20	33	21	1.97
481312--481451	63	2.2	63	80	2	156	25	20	33	21	1.97
481763--481884	63	1.9	63	80	6	140	30	36	13	19	1.91
484096--484189	21	4.6	21	89	6	131	24	9	25	40	1.85
484237--484287	19	2.6	19	84	3	57	23	13	29	33	1.93
490041--490118	21	3.7	21	72	17	72	41	20	16	21	1.91
490035--490121	42	2.1	42	87	6	124	37	20	14	26	1.92
490489--490566	21	3.7	21	72	17	72	41	20	16	21	1.91
490483--490569	42	2.1	42	87	6	124	37	20	14	26	1.92
493565--493596	2	16.0	2	100	0	64	0	50	0	50	1.00
494750--494785	14	2.6	14	95	0	63	50	38	0	11	1.38
495436--495493	29	2.0	29	93	0	98	13	37	25	22	1.91
495536--495616	14	5.4	14	78	16	81	24	38	28	8	1.85
495564--495597	10	3.4	10	84	15	52	23	38	29	8	1.85
495598--495682	33	2.6	33	86	0	116	25	23	36	14	1.93
495729--495788	23	2.6	23	86	5	77	10	36	26	26	1.88
495771--495803	14	2.4	14	94	0	57	6	30	39	24	1.79
496885--497029	60	2.4	59	82	3	175	17	24	36	21	1.95
499900--500020	44	2.8	44	93	0	206	67	5	4	22	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499896--499975	25	3.5	24	67	26	66	70	5	3	21	1.23
502782--502827	2	23.0	2	90	0	74	45	0	4	50	1.21
504683--504732	2	25.5	2	87	4	66	58	0	0	42	0.98
504776--504910	46	2.8	48	74	20	127	60	0	5	34	1.25
504918--504953	18	2.1	18	89	5	56	66	2	5	25	1.27
505314--505418	37	2.8	37	85	0	138	29	14	14	41	1.85
505960--506590	105	6.0	105	90	3	902	21	17	26	34	1.95
506762--507082	107	3.1	105	88	4	456	37	11	20	30	1.88
507198--507311	36	3.2	36	73	2	113	43	14	16	25	1.85
507153--507327	72	2.4	74	84	8	216	41	13	18	26	1.87
508468--509004	183	2.9	183	96	0	977	30	21	20	27	1.98
513053--513128	9	8.3	9	71	11	57	78	2	2	15	0.97
513053--513184	25	5.2	25	68	16	74	72	3	3	20	1.13
513064--513120	30	1.9	30	85	7	80	78	1	3	15	0.96
513084--513138	21	2.6	21	83	13	60	78	5	3	12	1.06
513375--513417	18	2.5	17	85	7	61	67	2	4	25	1.22
513299--513429	56	2.3	55	77	14	126	61	2	3	33	1.24
513284--513425	64	2.2	62	77	14	162	60	2	3	33	1.25
513774--513878	37	2.8	37	85	0	138	29	13	14	42	1.83
514777--514940	60	2.8	60	78	4	170	23	34	23	18	1.96
523390--523431	16	2.6	16	92	0	66	21	14	30	33	1.93
530302--530408	30	3.5	30	72	14	101	27	12	22	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531119--531223	51	2.0	54	92	5	180	46	7	8	37	1.63
534553--534845	117	2.6	112	87	8	393	24	21	14	39	1.91
536199--536278	8	10.5	8	73	15	71	8	12	1	77	1.05
536199--536257	13	4.1	14	71	16	57	10	11	0	77	0.98
536193--536251	20	3.2	19	84	13	70	8	13	0	77	0.97
536199--536242	20	2.2	20	92	8	72	9	11	0	79	0.93
536190--536277	24	3.9	23	77	5	81	7	14	1	76	1.07
549742--550034	117	2.6	112	86	8	384	24	21	13	39	1.90
549858--550512	333	2.0	334	90	1	1028	25	20	16	37	1.93
551382--551487	16	7.1	14	78	12	63	8	15	0	75	1.08
551385--551466	29	2.6	33	76	17	70	7	14	0	78	0.96
551393--551490	16	6.2	16	76	15	89	8	13	1	77	1.03
551384--551489	32	3.5	31	76	14	105	8	14	0	76	1.06
551407--551489	40	2.1	40	84	8	107	7	13	1	78	1.01
571075--571244	84	2.0	83	97	1	322	32	12	18	35	1.89
575486--575533	25	1.9	26	83	8	64	64	2	12	20	1.37
575671--575701	15	2.1	15	100	0	62	54	6	19	19	1.65
576370--576452	24	3.5	24	98	0	157	30	20	13	36	1.91
576818--576857	13	3.2	13	82	10	57	0	35	0	65	0.93
577116--577146	15	2.1	15	93	0	53	32	22	12	32	1.92
588593--588631	16	2.4	16	86	4	51	33	0	5	61	1.18
589158--589195	16	2.4	16	90	0	58	23	31	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599591--599662	30	2.4	30	85	0	99	23	22	18	36	1.95
601588--601702	60	1.9	60	85	0	158	46	3	16	33	1.64
602063--602139	36	2.2	34	81	9	84	45	1	3	49	1.28
602063--602144	34	2.4	34	82	11	96	46	1	3	48	1.27
613576--613606	10	3.1	10	100	0	62	90	0	9	0	0.46
626760--626799	14	2.9	14	85	3	55	2	12	27	57	1.48
628291--628511	35	6.2	34	71	18	148	45	4	6	42	1.51
628408--628527	28	3.7	31	72	20	86	43	4	7	45	1.51
628572--628610	18	2.2	18	86	9	53	23	15	0	61	1.33
633808--635971	106	20.4	106	97	0	3988	33	24	18	23	1.96
636178--636483	36	8.5	36	70	19	169	45	5	7	41	1.54
636279--636468	73	2.7	69	77	10	174	44	4	7	43	1.53
639713--639749	18	2.1	18	89	0	56	43	2	13	40	1.58
642778--642823	17	2.8	17	81	15	60	26	10	6	56	1.58
642776--642831	17	3.4	17	72	20	55	25	10	8	55	1.63
645977--646058	39	2.1	39	93	0	137	52	7	9	30	1.61
645981--646048	22	3.3	22	66	19	65	50	5	11	32	1.63
648351--648387	19	1.9	19	88	0	56	27	16	21	35	1.94
650449--650565	31	3.8	31	75	7	103	48	11	5	35	1.61
657321--657353	16	2.1	16	88	11	50	24	9	9	57	1.58
661188--661296	24	4.5	24	91	0	173	37	13	19	29	1.90
671023--671262	112	2.1	113	90	2	376	45	14	14	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671133--671588	182	2.5	182	94	0	786	44	14	15	26	1.84
677828--677889	17	3.5	17	72	22	56	56	3	3	37	1.32
678140--678184	22	2.0	22	82	0	54	28	2	15	53	1.54
682253--682277	11	2.3	11	100	0	50	32	24	36	8	1.84
682499--682550	3	18.0	3	84	7	63	36	0	0	63	0.95
682509--682560	12	4.2	12	80	9	52	44	0	0	55	0.99
684800--684853	28	2.0	28	88	3	83	35	5	0	59	1.21
684778--684859	28	2.8	30	76	12	80	32	6	0	60	1.21
687725--687807	43	1.9	43	90	0	130	30	12	24	33	1.91
690752--690823	21	3.7	20	82	14	96	88	0	11	0	0.50

Tables:   1   2   3   4   5   6   7