genome.fa.s7911.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007911.1 Hibiscus syriacus cultivar Beakdansim tig00110307_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1972160

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1033 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258375--258427	23	2.4	23	84	12	67	41	20	9	28	1.83
258633--258665	2	16.5	2	93	0	57	45	0	3	51	1.16
259920--259972	21	2.5	21	93	0	88	20	22	26	30	1.98
263270--263330	22	2.8	22	79	0	77	36	24	21	18	1.95
263544--263588	23	2.0	23	91	8	74	37	17	8	35	1.81
263799--263825	2	13.5	2	100	0	54	48	0	0	51	1.00
264021--264058	18	2.2	18	86	13	53	36	21	0	42	1.53
265060--265111	21	2.5	21	100	0	104	25	25	23	26	2.00
271751--271801	21	2.4	21	100	0	102	27	37	3	31	1.75
272182--272236	20	2.7	21	78	10	62	30	9	18	41	1.81
272306--272360	21	2.6	21	83	11	76	29	16	18	36	1.92
274483--274799	148	2.1	149	90	5	491	37	15	8	38	1.78
282318--282366	22	2.2	22	89	7	73	36	14	26	22	1.92
282346--282382	16	2.3	16	95	0	65	32	16	29	21	1.95
284356--284404	22	2.2	22	92	0	80	26	8	12	53	1.66
285208--285287	34	2.3	34	97	2	151	41	12	0	46	1.42
297260--297321	28	2.2	29	80	8	74	54	17	4	22	1.61
300606--301032	54	7.9	54	90	0	638	27	20	19	32	1.97
306616--306735	54	2.2	54	88	4	172	22	19	25	33	1.97
307057--307089	13	2.5	14	85	14	52	42	6	9	42	1.61
315127--315167	20	2.0	20	95	0	73	26	14	34	24	1.94
315125--315288	74	2.2	75	82	2	197	23	17	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327535--327843	156	2.0	154	94	2	548	36	16	19	26	1.93
335375--335404	11	2.7	11	94	0	51	16	6	10	66	1.41
336602--336637	2	18.0	2	100	0	72	50	0	0	50	1.00
337484--337512	14	2.1	14	100	0	58	27	27	24	20	1.99
345137--345189	21	2.5	21	75	0	52	43	18	11	26	1.84
345656--345716	32	1.9	32	82	0	77	27	21	32	18	1.96
346773--346811	19	2.2	18	86	9	53	30	10	25	33	1.89
349665--349725	21	3.2	21	63	29	55	31	3	21	44	1.68
349664--349773	35	3.1	35	88	5	159	31	3	20	44	1.68
349657--349775	36	3.3	37	86	8	165	31	4	19	44	1.70
350183--350216	16	2.1	16	94	0	59	32	8	26	32	1.87
354162--354222	21	3.2	21	65	29	64	31	4	21	42	1.74
354154--354273	35	3.3	36	88	6	172	32	5	19	43	1.72
357325--357376	21	2.5	22	81	9	63	23	34	5	36	1.79
366864--367117	71	3.6	70	76	4	188	15	18	29	36	1.91
367372--367660	36	8.0	36	80	1	274	33	10	25	29	1.90
367383--367660	108	2.6	106	81	7	310	33	10	25	30	1.90
369261--369307	10	4.7	10	89	0	58	0	31	2	65	1.04
369249--369307	15	3.9	14	80	12	55	0	30	3	66	1.08
369667--369709	20	2.2	20	83	8	52	27	9	4	58	1.49
370450--370512	3	20.0	3	77	9	63	31	1	1	65	1.12
370477--370512	13	2.8	13	91	0	54	36	2	0	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370453--370512	16	3.8	16	78	8	68	31	1	1	65	1.13
371850--371918	3	22.3	3	79	16	70	27	0	1	71	0.95
372276--372301	7	3.7	7	100	0	52	26	0	11	61	1.30
374922--375004	43	1.9	44	90	2	132	28	9	21	39	1.85
375079--375119	7	5.9	7	83	11	57	14	17	9	58	1.62
377368--377627	130	2.0	130	98	0	502	34	22	22	21	1.97
381005--381181	76	2.3	76	81	7	207	31	18	23	27	1.97
382053--382368	54	5.9	54	93	0	515	37	15	21	24	1.93
382734--382807	22	3.4	22	78	0	67	36	10	14	37	1.82
383856--383918	3	20.0	3	77	9	63	31	1	1	65	1.12
383883--383918	13	2.8	13	91	0	54	36	2	0	61	1.11
383859--383918	16	3.8	16	78	8	68	31	1	1	65	1.13
385127--385162	18	2.0	18	100	0	72	33	11	0	55	1.35
385219--385303	12	7.4	12	78	16	83	27	1	2	69	1.08
385241--385309	3	23.3	3	76	19	65	26	0	1	72	0.93
385230--385300	20	3.3	20	74	18	63	26	0	2	70	1.01
385219--385309	45	2.0	45	85	6	123	27	1	2	69	1.07
385243--385310	17	4.0	18	74	25	76	25	0	1	73	0.92
385383--385419	14	2.5	15	83	16	51	37	2	0	59	1.12
385496--385537	20	2.2	19	86	4	57	33	0	2	64	1.07
385401--385622	112	2.0	111	79	8	236	37	9	8	45	1.66
388379--388425	20	2.3	20	96	0	85	40	38	0	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398178--398244	3	23.0	3	75	6	57	32	0	4	62	1.15
399632--399669	18	2.1	18	85	9	51	39	0	2	57	1.12
408493--408637	75	1.9	75	88	0	218	34	15	18	31	1.93
408493--408654	75	2.2	75	86	0	216	33	15	20	30	1.94
409510--409595	44	2.0	42	86	4	118	34	10	25	29	1.89
410005--410130	22	5.7	22	80	10	150	34	17	14	34	1.90
409999--410130	44	3.0	44	94	0	228	34	18	13	34	1.90
410482--411260	112	6.9	112	84	7	892	38	15	19	26	1.92
411000--411083	31	2.6	33	67	14	77	34	14	17	33	1.90
411621--411675	22	2.5	22	84	0	74	10	50	23	14	1.74
417174--417231	2	29.0	2	100	0	116	50	0	0	50	1.00
417304--417454	81	1.9	81	81	2	187	27	23	11	36	1.90
417786--418327	57	9.5	57	86	3	662	34	19	10	36	1.85
417786--418327	113	4.8	113	84	4	660	34	19	10	36	1.85
417786--418327	170	3.2	169	86	4	714	34	19	10	36	1.85
422423--422935	22	23.5	22	89	2	782	39	0	11	47	1.45
422959--423017	31	1.9	31	89	0	91	44	6	5	44	1.52
424173--424547	57	6.5	57	79	9	246	33	17	12	36	1.87
424227--424546	57	5.6	57	87	0	442	33	18	11	35	1.87
424232--424546	171	1.8	172	88	0	488	33	18	11	35	1.87
424815--424845	2	15.5	2	100	0	62	48	0	0	51	1.00
425457--426115	57	11.6	57	88	1	937	33	18	11	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426446--426671	95	2.4	93	79	8	213	25	25	15	33	1.95
426638--426691	20	2.7	20	97	0	99	24	31	14	29	1.95
429013--429043	2	15.5	2	100	0	62	48	0	0	51	1.00
431307--431906	57	10.5	57	87	1	763	33	17	12	37	1.87
432244--432302	22	2.8	20	78	9	73	22	23	16	37	1.94
432245--432316	18	3.7	18	74	17	54	26	23	16	33	1.96
433791--433854	30	2.1	30	83	11	78	18	12	6	62	1.50
440602--440653	19	2.7	19	79	5	61	82	0	17	0	0.66
440611--440651	18	2.2	18	86	4	55	82	0	17	0	0.66
441874--442083	44	4.8	45	74	12	145	32	23	11	31	1.90
441789--442089	88	3.4	88	79	4	311	32	23	12	31	1.92
441790--442109	176	1.8	176	80	2	383	31	24	13	31	1.93
448348--448401	21	2.6	21	96	0	99	42	0	11	46	1.39
448383--448414	13	2.4	14	94	5	57	40	0	9	50	1.35
448362--448433	34	2.0	36	86	7	103	41	0	9	48	1.36
448362--448528	36	4.8	36	76	10	123	47	3	5	42	1.45
448480--448569	41	2.1	43	83	6	121	48	8	3	38	1.51
448679--448733	13	4.0	13	81	15	58	18	3	1	76	1.02
448679--448733	27	2.0	29	82	13	71	18	3	1	76	1.02
450989--451054	2	33.0	2	100	0	132	50	0	0	50	1.00
459079--459133	21	2.5	22	82	5	76	43	1	7	47	1.41
459095--459157	19	3.2	20	77	11	67	41	0	7	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459103--459168	19	3.5	19	76	17	66	40	0	6	53	1.26
459108--459314	11	16.8	13	63	31	52	38	1	7	52	1.39
459254--459321	22	3.5	20	71	20	63	38	1	5	54	1.34
459274--459322	22	2.2	23	88	3	73	36	2	4	57	1.30
459310--459347	19	2.1	19	85	9	53	28	5	0	65	1.14
473858--473900	7	6.3	7	83	5	61	41	0	11	46	1.40
473860--473899	20	2.0	20	90	0	62	42	0	12	45	1.42
473897--474215	5	63.8	5	100	0	638	40	19	0	40	1.52
475471--475527	23	2.6	23	86	5	73	64	0	1	33	1.04
475474--475788	7	45.1	7	70	19	153	53	6	1	38	1.34

Tables:   1   2   3   4   5   6   7   8   9