genome.fa.s7911.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007911.1 Hibiscus syriacus cultivar Beakdansim tig00110307_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1972160

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 1033 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475512--475788	2	145.5	2	66	24	95	52	7	1	39	1.36
475575--475744	37	4.6	38	73	18	101	53	7	0	39	1.28
475587--475766	60	2.9	61	78	14	181	53	6	0	39	1.32
476466--476587	50	2.4	51	80	2	131	27	15	18	38	1.91
477395--477437	11	3.8	11	90	3	68	4	6	0	88	0.63
477942--477998	29	2.0	29	85	0	78	54	7	10	28	1.60
479707--479755	24	2.0	24	92	0	80	32	10	10	46	1.71
485491--485561	29	2.4	30	80	4	90	46	12	15	25	1.81
487247--487298	24	2.1	25	89	3	79	30	13	7	48	1.71
497798--497844	25	1.9	24	83	12	60	70	4	0	25	1.05
497817--497864	14	3.2	14	85	11	60	75	0	0	25	0.81
499489--499539	25	2.0	26	88	3	77	19	5	3	70	1.24
499489--499540	14	3.9	13	80	17	54	21	5	3	69	1.26
506738--506927	7	27.7	7	71	20	109	53	5	0	40	1.29
506748--507005	14	18.0	14	70	22	110	50	7	1	39	1.40
506796--506990	53	3.7	54	73	20	162	49	8	1	40	1.40
506944--507005	25	2.4	26	76	17	67	41	9	4	43	1.59
513632--513702	31	2.4	30	81	13	76	45	9	16	28	1.80
514072--514129	30	1.9	30	89	6	91	27	3	32	36	1.74
516703--516740	17	2.2	17	86	9	51	34	18	2	44	1.64
516888--516921	14	2.4	14	100	0	68	47	11	5	35	1.65
523922--524003	29	2.7	32	87	12	120	43	7	17	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524363--524420	30	1.9	30	86	6	82	25	1	31	41	1.66
525113--525178	31	2.2	31	81	8	73	39	7	19	33	1.80
535708--536097	54	7.2	54	83	1	485	32	18	17	30	1.95
535711--536100	162	2.4	162	86	0	539	33	18	17	30	1.95
541596--541622	3	9.0	3	100	0	54	66	0	0	33	0.92
543823--543848	9	2.9	9	100	0	52	88	0	0	11	0.52
543905--543970	25	2.6	26	79	13	66	40	7	6	45	1.57
544040--544208	36	4.7	37	79	7	145	43	5	4	46	1.49
545774--545897	62	2.0	62	100	0	248	25	25	12	35	1.92
553521--553798	72	3.9	70	79	5	272	31	24	9	34	1.87
553521--553798	108	2.6	105	80	8	301	31	24	9	34	1.87
553521--553798	36	7.7	36	77	7	237	31	24	9	34	1.87
553826--553907	33	2.5	33	86	9	114	30	17	10	41	1.83
554107--554258	71	2.1	71	83	0	187	38	28	17	15	1.90
554111--554278	71	2.4	71	80	0	183	36	30	15	17	1.91
554111--554297	71	2.6	71	76	6	180	36	29	16	17	1.92
554706--555177	236	2.0	235	96	0	872	36	13	13	36	1.85
557573--557780	47	4.4	46	90	3	308	20	23	11	44	1.84
557616--557748	27	5.5	26	64	23	74	18	24	12	44	1.85
557636--557674	20	1.9	21	89	5	62	15	28	15	41	1.87
558173--558247	19	3.6	21	81	10	75	25	26	16	32	1.96
566180--566241	16	3.9	16	91	0	88	59	19	9	11	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566180--566242	32	2.0	32	90	0	99	58	19	9	12	1.61
566464--566522	11	5.2	11	80	8	55	23	22	22	32	1.98
566465--566522	23	2.5	23	88	0	80	24	22	20	32	1.98
566761--566798	18	2.2	18	90	4	60	63	5	10	21	1.46
568307--568393	24	3.6	24	85	0	120	59	21	8	10	1.55
569184--569251	27	2.5	27	95	0	118	27	16	27	27	1.97
582297--582336	21	1.9	21	85	10	55	35	10	2	52	1.48
589662--589749	27	3.3	26	71	14	74	46	2	2	48	1.27
589700--589760	27	2.3	27	80	5	70	47	1	1	49	1.21
604399--604444	19	2.4	19	100	0	92	39	21	4	34	1.73
604859--604982	25	5.0	24	66	15	63	60	12	1	25	1.41
604773--604988	76	2.9	75	87	8	307	57	12	1	28	1.44
606822--606919	5	19.2	5	70	15	67	72	2	4	21	1.12
606879--606917	21	1.9	19	90	10	60	82	2	2	12	0.89
607520--607573	18	3.0	18	76	10	56	72	1	3	22	1.10
607618--607652	11	3.1	11	88	8	52	74	2	0	22	0.95
607868--608434	282	2.0	283	99	0	1118	40	15	17	26	1.90
608520--608723	73	2.8	71	84	9	254	57	12	0	28	1.42
608673--608719	24	2.0	24	82	0	58	61	12	2	23	1.42
616290--616322	17	2.0	17	88	5	50	27	15	15	42	1.86
618074--618126	26	2.0	27	92	3	90	50	0	3	45	1.19
620260--620294	18	1.9	18	94	0	61	25	31	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
621139--621182	20	2.3	18	82	14	61	27	15	20	36	1.93
621144--621192	20	2.4	20	93	3	80	26	20	20	32	1.97
626016--626096	40	2.0	40	87	0	117	27	27	19	25	1.99
626016--626090	18	3.9	18	75	13	69	26	29	20	24	1.99
626928--627002	20	3.8	20	83	0	105	28	21	18	32	1.97
628179--628375	54	3.6	53	79	6	175	32	19	22	25	1.97
628356--628486	55	2.4	55	80	0	154	27	19	22	30	1.98
630596--630668	35	2.1	35	94	0	128	41	8	23	27	1.82
635337--635409	21	3.4	21	80	12	69	21	4	2	71	1.16
636688--636750	27	2.3	27	91	0	108	42	1	0	55	1.09
636692--636769	27	3.1	25	87	7	97	39	1	1	57	1.15
638295--638369	3	26.0	3	80	12	86	66	0	2	30	1.05
638512--638569	20	2.9	21	71	7	57	22	17	10	50	1.76
640285--640326	22	1.9	22	95	0	75	54	4	7	33	1.49
652525--652603	3	26.3	3	87	10	101	68	0	2	29	1.03
654776--654841	23	2.9	22	82	10	71	77	4	9	9	1.12
654768--654848	30	2.7	30	81	7	76	76	4	9	8	1.14
654786--654871	23	3.5	24	78	13	88	77	8	6	6	1.11
657118--657191	37	2.0	37	100	0	148	21	37	18	21	1.94
660157--660207	27	2.0	25	88	7	75	66	7	5	19	1.38
667150--667194	21	2.1	21	84	8	56	57	2	13	26	1.48
672820--672871	3	17.3	3	100	0	104	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672908--672979	34	2.2	34	85	5	94	47	9	6	36	1.64
688463--688585	35	3.5	35	77	8	142	31	17	19	31	1.95
688463--688602	35	4.0	35	76	12	135	32	17	19	31	1.95
688464--688601	71	1.9	71	89	5	217	31	17	19	31	1.95
690085--690157	27	2.7	27	82	6	76	41	1	0	57	1.07
694953--695015	23	2.8	22	81	9	74	53	1	6	38	1.36
697405--697464	3	21.0	3	81	10	72	63	0	3	33	1.11
697816--697892	40	1.9	40	83	0	100	22	16	32	28	1.96
698271--698399	37	3.6	34	83	10	150	37	14	17	30	1.89
698306--698368	20	3.3	20	70	28	64	39	14	17	28	1.89
699574--699657	13	5.9	14	75	21	77	0	17	8	73	1.07
699574--699659	20	3.5	27	72	26	84	0	17	8	74	1.05
699574--699649	19	3.9	19	79	17	84	0	17	7	75	1.04
699593--699657	34	1.9	34	87	12	98	0	18	9	72	1.11
704861--704890	15	2.0	15	100	0	60	60	0	0	40	0.97
711420--711493	15	5.1	15	69	9	64	50	1	0	48	1.09
714567--714606	15	2.7	15	92	0	62	62	0	0	37	0.95
714563--714609	15	3.1	16	84	6	55	59	0	0	40	0.97
715125--715186	18	3.4	18	90	0	88	24	20	37	17	1.94
721483--722054	237	2.4	236	89	1	842	37	10	22	28	1.88
721472--722054	59	9.9	59	86	1	772	37	10	22	28	1.88
729790--729844	2	28.5	2	90	7	69	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729784--729867	38	2.3	35	87	8	114	35	1	0	63	1.03
729891--729976	4	21.2	4	71	17	54	16	2	5	75	1.10
729891--730033	73	1.9	75	82	10	179	18	4	3	72	1.17
729991--730034	20	2.2	20	88	8	63	25	2	0	72	0.96
729903--729941	9	4.3	9	84	12	53	17	2	2	76	1.01
730517--730570	19	2.8	19	97	2	99	20	35	20	24	1.96
735004--735167	65	2.5	64	81	3	204	28	15	25	30	1.96
735118--735164	19	2.5	19	83	10	62	25	17	31	25	1.97
737022--737085	21	3.0	21	81	4	76	29	6	40	23	1.79
739765--739812	12	3.8	12	81	10	51	27	2	2	68	1.11

Tables:   1   2   3   4   5   6   7   8   9