genome.fa.s7911.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007911.1 Hibiscus syriacus cultivar Beakdansim tig00110307_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1972160

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1033 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1883692--1883938	87	2.9	87	89	3	365	52	12	2	31	1.53
1883940--1883984	22	2.0	22	95	0	81	15	20	44	20	1.87
1883980--1884086	51	2.1	51	94	0	187	25	27	25	22	2.00
1884731--1884772	20	2.0	21	86	4	59	47	14	16	21	1.82
1890849--1890915	30	2.2	31	91	2	109	55	0	11	32	1.37
1895790--1895832	13	3.2	13	80	3	50	39	23	16	20	1.92
1895835--1895872	15	2.5	15	95	0	67	13	21	34	31	1.91
1901095--1901154	31	1.9	31	86	6	86	11	25	30	33	1.91
1904991--1905068	32	2.4	32	83	10	88	30	25	24	19	1.98
1914879--1915069	96	2.0	96	96	0	355	37	24	11	26	1.90
1916186--1916384	21	9.6	21	86	4	185	30	23	22	24	1.99
1916206--1916561	103	3.5	103	79	13	298	30	20	23	25	1.98
1916227--1916452	83	2.8	82	78	10	218	31	20	22	25	1.98
1916488--1916593	21	5.1	21	78	15	121	24	21	23	30	1.99
1916488--1916593	42	2.6	41	82	10	135	24	21	23	30	1.99
1916576--1916632	21	2.8	20	75	15	53	26	17	21	35	1.95
1916725--1916762	5	7.2	5	96	3	58	23	57	18	0	1.40
1917242--1917278	6	6.5	6	90	9	60	0	16	54	29	1.43
1917242--1917278	17	2.2	17	100	0	74	0	16	54	29	1.43
1917239--1917274	11	3.3	11	88	11	56	0	19	52	27	1.46
1917387--1917440	27	2.0	27	96	0	99	38	27	14	18	1.90
1917419--1917494	21	3.6	21	79	13	93	34	26	21	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1917529--1917575	21	2.3	21	89	10	71	31	14	21	31	1.94
1917868--1917905	20	1.9	20	88	0	58	21	26	10	42	1.85
1930660--1930714	21	2.6	21	82	2	65	29	10	29	30	1.91
1937326--1937395	20	3.5	20	75	7	61	32	24	15	27	1.95
1938162--1938199	17	2.3	17	95	4	69	68	0	26	5	1.11
1941608--1941659	20	2.6	20	96	0	95	38	26	13	21	1.90
1941649--1941747	21	4.8	20	72	6	72	36	23	19	21	1.95
1941714--1941907	20	9.6	20	81	5	221	35	25	19	19	1.95
1941714--1941907	60	3.2	60	83	0	253	35	25	19	19	1.95
1942289--1942359	33	2.2	33	92	0	115	11	22	18	47	1.80
1942480--1942534	14	3.6	14	73	21	56	40	23	27	9	1.85
1942480--1942550	33	2.2	33	92	0	115	42	25	23	8	1.82
1942546--1942643	19	5.7	19	70	22	81	10	24	22	42	1.84
1942568--1942657	14	5.7	14	74	23	81	8	25	23	42	1.83
1942551--1942665	33	3.5	33	95	0	212	9	24	20	45	1.81
1944364--1944745	185	2.1	186	98	0	748	22	12	18	46	1.83
1944364--1944743	93	4.1	93	98	0	744	22	12	18	46	1.83
1944787--1944901	19	6.3	19	81	10	141	46	28	16	8	1.77
1944897--1945031	19	7.6	19	76	16	137	10	19	24	45	1.81
1944919--1944975	14	3.7	14	77	20	60	8	21	24	45	1.80
1944902--1944994	33	2.8	33	98	0	177	9	20	22	47	1.79
1946848--1946920	38	1.9	38	97	0	137	28	1	16	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1946843--1946907	19	3.4	19	64	8	51	24	1	15	58	1.46
1946902--1946937	14	2.6	14	95	0	63	33	0	22	44	1.53
1947044--1947145	19	5.6	19	84	13	151	44	17	23	14	1.86
1947174--1947499	19	18.4	19	80	15	405	14	20	17	47	1.82
1947152--1947471	52	6.0	52	94	4	550	14	21	16	46	1.83
1947174--1947499	71	4.6	72	82	13	389	14	20	17	47	1.82
1947152--1947471	161	2.0	157	93	3	552	14	21	16	46	1.83
1947193--1947499	33	8.8	33	80	12	280	14	20	17	47	1.82
1949805--1949829	12	2.1	12	100	0	50	0	28	0	72	0.86
1950004--1950048	23	2.0	23	86	8	65	35	22	15	26	1.94
1950723--1951090	20	18.5	20	86	5	449	20	19	26	34	1.96
1952066--1952113	23	2.1	22	84	3	60	56	20	2	20	1.53
1956422--1956489	26	2.5	27	76	4	75	19	14	8	57	1.63
1958903--1958960	5	12.6	5	82	14	72	82	0	17	0	0.66
1958901--1958956	26	2.2	26	93	6	96	83	0	16	0	0.64
1958904--1958970	9	7.3	9	82	14	75	80	0	16	2	0.83
1960490--1960547	28	2.1	28	93	6	100	24	24	29	22	1.99
1961841--1962465	40	15.9	40	90	1	800	29	16	12	41	1.85
1962020--1962083	20	3.2	20	62	16	51	31	15	10	42	1.82
1962173--1962241	23	3.3	23	61	23	60	30	14	15	39	1.88
1962279--1962342	20	3.2	20	64	16	51	23	15	12	48	1.79
1962395--1962633	133	1.8	132	81	2	300	26	18	13	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1962594--1962917	61	5.4	61	76	10	319	30	16	13	39	1.86
1962637--1962715	28	2.8	29	84	11	117	29	15	16	39	1.89
1962652--1962706	13	4.2	13	74	19	51	30	10	16	41	1.83
1962599--1962939	122	2.8	121	78	11	353	30	15	13	40	1.86
1963279--1963864	136	4.3	136	90	2	872	33	17	22	26	1.96
1965077--1965161	36	2.4	35	80	7	91	25	2	10	61	1.41
1969430--1969474	23	2.0	23	87	8	67	17	11	4	66	1.38

Tables:   1   2   3   4   5   6   7   8   9

The End!