genome.fa.s7911.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007911.1 Hibiscus syriacus cultivar Beakdansim tig00110307_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1972160

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 1033 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1647687--1647729	12	3.8	11	77	17	52	32	2	4	60	1.30
1656010--1656064	24	2.3	24	77	0	65	49	16	12	21	1.79
1660640--1660669	14	2.1	14	93	0	51	36	23	26	13	1.92
1663256--1663285	13	2.3	13	94	0	51	80	0	3	16	0.85
1663364--1663668	38	7.9	38	82	12	349	46	5	2	44	1.42
1663525--1663550	2	13.0	2	100	0	52	50	0	0	50	1.00
1663369--1663660	121	2.5	120	84	10	374	47	5	3	43	1.42
1665365--1665420	20	2.6	22	72	18	55	67	0	3	28	1.07
1670863--1670913	26	2.0	26	92	0	84	13	25	13	47	1.80
1675710--1675761	9	5.9	8	80	14	50	71	0	1	26	0.97
1675710--1675761	4	11.8	4	77	18	50	71	0	1	26	0.97
1675707--1675762	22	2.8	20	86	13	71	69	0	1	28	0.98
1675710--1675774	19	3.2	19	82	8	67	67	0	3	29	1.05
1680345--1680378	14	2.5	13	90	9	59	67	0	0	32	0.91
1682825--1682923	34	3.0	32	76	12	92	32	0	10	57	1.32
1683565--1683613	19	2.6	18	81	9	62	20	4	2	73	1.10
1686580--1686672	5	18.8	5	72	12	68	18	4	4	73	1.17
1686563--1686616	22	2.4	23	84	9	67	14	7	3	74	1.18
1686626--1686675	14	3.6	14	86	7	66	18	4	2	76	1.04
1686580--1686673	11	8.9	11	71	15	56	18	4	4	73	1.16
1688430--1688491	32	1.9	32	84	12	83	25	0	11	62	1.28
1693993--1694069	22	3.5	22	78	16	72	19	22	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1709841--1709880	13	3.1	13	88	0	62	47	20	15	17	1.83
1709893--1709932	14	2.9	14	84	0	53	30	15	30	25	1.95
1713618--1713694	39	2.0	39	94	0	136	35	12	15	36	1.86
1717526--1717552	7	3.9	7	100	0	54	44	14	0	40	1.46
1717549--1717605	24	2.4	24	85	5	71	52	17	14	15	1.75
1722658--1722683	6	4.3	6	100	0	52	84	0	0	15	0.62
1723962--1724015	21	2.7	19	73	15	56	48	14	11	25	1.77
1724002--1724554	197	2.8	199	78	5	568	42	12	15	29	1.84
1728293--1728343	18	2.8	18	93	0	84	37	0	19	43	1.51
1730176--1731276	405	2.8	394	85	8	1501	36	13	13	36	1.85
1736323--1736396	21	3.5	20	88	3	94	31	29	21	17	1.96
1736400--1736589	21	9.3	19	75	15	164	22	20	23	34	1.97
1736408--1736561	21	7.4	21	78	13	176	19	20	26	33	1.96
1736392--1736589	42	4.8	42	90	3	305	21	20	23	34	1.96
1736392--1736589	82	2.4	83	88	3	301	21	20	23	34	1.96
1736673--1736704	6	5.5	6	96	3	57	31	53	15	0	1.43
1737451--1737590	42	3.3	42	92	0	244	36	22	19	21	1.95
1737451--1737596	21	6.9	20	72	16	109	36	22	19	21	1.95
1737611--1737657	21	2.2	21	92	0	76	19	14	34	31	1.92
1740626--1740665	21	1.9	21	85	10	55	37	12	12	37	1.81
1746120--1746171	27	1.9	27	84	7	70	15	17	25	42	1.88
1755018--1755065	21	2.3	21	82	10	64	22	8	8	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1757508--1757555	19	2.4	21	86	10	73	18	16	10	54	1.70
1758091--1758124	17	2.0	17	94	0	59	47	14	17	20	1.83
1758509--1758573	2	33.5	2	87	6	98	47	1	1	49	1.20
1759971--1760165	37	5.5	37	72	14	169	30	17	9	42	1.81
1759971--1760269	37	8.5	36	68	19	159	30	18	9	41	1.82
1759988--1760368	102	3.7	103	86	3	502	30	19	9	39	1.84
1760425--1760582	63	2.5	60	79	12	174	31	17	12	37	1.88
1760549--1760884	77	4.4	77	83	8	400	30	16	11	41	1.84
1760697--1760825	38	3.4	38	73	10	136	27	17	10	44	1.82
1760983--1761055	38	1.9	38	88	5	112	41	10	13	34	1.80
1761021--1761122	52	1.9	53	82	5	127	34	9	13	42	1.78
1761216--1761328	42	2.7	41	78	6	129	26	23	22	28	1.99
1761305--1761776	144	3.3	144	86	5	641	27	26	15	30	1.96
1762588--1762928	139	2.5	139	85	1	434	36	17	19	26	1.93
1763909--1763935	2	13.5	2	100	0	54	51	0	48	0	1.00
1768441--1768501	19	3.2	19	88	0	86	18	34	18	29	1.94
1770343--1770403	18	3.2	18	71	13	50	49	4	1	44	1.33
1770501--1770556	16	3.5	16	76	13	53	42	7	19	30	1.78
1770546--1770623	32	2.4	32	81	8	88	38	15	17	28	1.91
1770577--1770623	16	2.9	16	80	0	58	42	14	19	23	1.88
1770801--1770904	47	2.2	49	85	3	140	29	23	21	25	1.99
1771468--1771528	16	3.8	16	86	0	95	54	21	14	9	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1772621--1772676	14	4.3	14	76	17	66	51	21	14	12	1.74
1772614--1772675	24	2.6	24	94	0	106	53	20	12	12	1.72
1773212--1773246	18	1.9	18	94	0	61	42	2	0	54	1.15
1773217--1773255	18	2.2	18	85	0	51	46	5	0	48	1.24
1777891--1777947	28	2.1	28	93	3	98	22	17	28	31	1.97
1778093--1778129	6	6.5	6	96	3	60	29	54	16	0	1.43
1778627--1778712	6	14.8	6	98	1	151	0	12	52	34	1.40
1785903--1785951	18	2.7	19	78	15	59	48	20	2	28	1.60
1786269--1786356	21	4.2	21	75	5	79	37	21	14	26	1.92
1786273--1786355	42	2.0	42	85	0	112	36	20	15	27	1.93
1790145--1790193	18	2.7	19	75	15	50	48	22	2	26	1.61
1790475--1790542	23	3.0	23	75	0	73	36	25	16	22	1.94
1790480--1790626	21	6.8	21	72	6	98	35	23	17	23	1.95
1790540--1790620	42	1.9	42	92	0	135	35	19	17	27	1.94
1797137--1797189	21	2.5	21	100	0	106	26	15	28	30	1.96
1797234--1797273	20	2.0	21	95	5	73	25	20	22	32	1.98
1809952--1809990	21	1.9	19	85	10	51	41	2	10	46	1.51
1811512--1811582	32	2.2	32	89	0	106	25	23	18	32	1.97
1813272--1813314	13	3.3	13	100	0	86	20	23	9	46	1.79
1815939--1815988	21	2.4	21	80	9	57	36	24	18	22	1.95
1817732--1817756	13	1.9	13	100	0	50	56	0	4	40	1.18
1819874--1819923	23	2.2	23	82	7	57	38	4	2	56	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1819884--1819950	22	3.0	21	81	14	64	25	5	1	67	1.22
1823363--1823425	23	2.9	23	82	15	80	15	7	6	69	1.33
1830016--1830085	22	3.3	21	72	16	63	42	4	2	50	1.37
1830047--1830222	90	2.0	90	94	2	309	46	6	9	38	1.61
1830751--1830814	2	31.5	2	96	3	119	48	0	1	50	1.10
1835119--1835145	14	1.9	14	100	0	54	40	22	14	22	1.90
1836936--1836980	17	3.0	15	79	20	58	42	2	6	48	1.41
1836931--1836978	17	3.1	17	77	19	52	39	4	8	47	1.53
1838131--1838163	2	16.5	2	93	0	57	51	3	0	45	1.16
1838473--1838515	22	1.9	23	81	13	54	20	13	4	60	1.51
1845151--1845182	16	2.0	16	93	0	55	46	6	40	6	1.54
1845862--1845898	18	1.9	18	89	10	56	56	0	0	43	0.99
1845857--1845904	18	2.9	16	78	21	55	54	0	0	45	0.99
1846583--1846651	30	2.4	29	80	7	86	20	1	26	52	1.55
1846682--1846757	11	6.9	11	70	14	50	52	1	0	46	1.08
1846694--1846757	20	3.3	20	77	14	71	53	0	0	46	1.00
1847050--1847115	15	4.3	15	74	11	62	42	0	0	57	0.98
1847060--1847114	15	3.6	16	83	13	71	40	0	0	60	0.97
1847062--1847110	14	3.3	14	81	13	53	38	0	0	61	0.96
1846428--1847437	350	2.9	346	84	4	1283	35	7	18	38	1.79
1847386--1847440	19	2.9	19	81	7	76	47	0	0	52	1.00
1849221--1849377	76	2.1	77	82	3	192	22	21	9	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1850127--1850195	36	1.9	36	93	0	120	37	13	20	28	1.90
1851403--1851435	17	1.9	17	88	11	50	27	15	12	45	1.81
1851681--1851724	21	2.0	22	86	4	63	61	4	18	15	1.50
1869338--1869376	14	2.8	14	92	0	60	23	30	15	30	1.95
1871641--1871682	14	2.9	14	82	10	57	33	16	2	47	1.60
1873710--1873750	16	2.5	17	88	4	57	39	14	17	29	1.89
1879050--1879086	15	2.4	16	90	9	67	37	5	5	51	1.48
1879922--1879974	20	2.7	20	82	2	72	18	28	30	22	1.98
1883685--1883721	19	2.1	18	90	10	58	48	13	2	35	1.57
1883692--1883938	29	8.6	29	86	3	311	52	12	2	31	1.53

Tables:   1   2   3   4   5   6   7   8   9