genome.fa.s7918.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007918.1 Hibiscus syriacus cultivar Beakdansim tig00110321_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2302251

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1022 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403352--403660	61	5.0	60	90	3	474	48	3	2	44	1.34
403352--403660	123	2.5	121	91	3	510	48	3	2	44	1.34
407531--407599	2	34.5	2	100	0	138	50	0	0	49	1.00
424227--424279	28	1.9	27	88	3	79	32	1	16	49	1.57
424226--424290	27	2.3	29	82	10	82	36	1	15	46	1.55
424317--424383	34	1.9	35	85	8	93	40	0	10	49	1.37
424484--424523	21	1.9	21	100	0	80	27	0	15	57	1.38
424722--424788	29	2.3	30	89	7	111	37	1	11	49	1.49
432871--432930	20	2.9	19	80	9	57	23	30	26	20	1.98
432913--432952	21	1.9	21	85	10	55	25	37	25	12	1.91
435432--435464	16	2.1	16	100	0	66	18	27	30	24	1.98
436056--436160	52	2.0	53	94	5	187	31	39	14	15	1.87
436341--436387	14	3.6	14	75	21	57	46	17	0	36	1.48
436342--436387	24	1.9	24	95	0	83	45	17	0	36	1.49
436356--436974	60	10.2	60	75	17	498	46	12	0	40	1.46
436473--436604	46	2.8	48	86	12	193	48	13	0	37	1.48
436623--436650	13	2.2	13	100	0	56	53	7	0	39	1.28
436362--437008	203	3.0	210	80	15	759	46	12	0	40	1.45
436659--436707	24	2.0	24	84	7	64	44	14	0	40	1.45
436724--436808	10	7.4	11	69	22	50	45	15	0	38	1.46
436794--437083	49	5.4	50	73	21	237	45	12	0	41	1.45
437017--437042	11	2.4	11	100	0	52	46	15	0	38	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436968--437083	60	1.9	60	89	3	180	45	14	0	39	1.45
437064--437088	10	2.5	10	100	0	50	40	20	0	40	1.52
438678--438812	29	4.5	29	73	7	108	16	25	33	24	1.96
451323--451356	3	11.3	3	87	12	52	67	0	2	29	1.05
455563--455640	35	2.2	35	93	0	129	47	5	5	42	1.47
455574--455632	18	3.3	18	71	21	52	49	5	5	40	1.47
465611--465640	2	15.0	2	92	0	51	46	0	53	0	1.00
466219--466294	36	2.1	36	85	7	100	47	1	3	47	1.29
466440--466490	20	2.5	20	100	0	102	19	23	11	45	1.83
466671--466721	20	2.5	20	93	0	84	33	25	19	21	1.97
466751--466988	20	11.8	20	72	9	124	38	23	17	20	1.93
466751--466985	81	2.9	82	84	3	262	38	23	17	20	1.93
466814--466985	41	4.2	41	87	1	256	37	24	18	19	1.94
466751--466985	122	1.9	122	85	1	319	38	23	17	20	1.93
467540--467618	20	3.9	21	86	5	94	51	17	18	11	1.75
467540--467661	20	6.5	19	75	13	92	49	21	18	10	1.78
467657--467769	20	6.1	19	78	13	110	12	23	20	43	1.86
467657--467760	19	5.6	19	79	14	92	12	24	22	41	1.88
469414--469793	94	4.1	94	96	1	656	21	12	18	47	1.81
469844--469949	36	2.7	39	75	12	110	47	21	17	13	1.82
469881--469959	19	4.3	19	87	6	101	44	24	18	12	1.85
469994--470060	20	3.3	20	91	0	107	19	17	20	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470544--470648	21	5.0	21	71	3	86	20	37	18	23	1.94
470541--470651	42	2.6	42	77	5	109	20	37	18	23	1.94
472005--472040	14	2.6	14	90	0	54	30	0	22	47	1.52
472186--472319	33	3.8	33	83	11	160	14	23	20	42	1.88
472181--472286	19	5.8	19	84	11	150	14	21	17	46	1.84
472181--472348	71	2.3	73	86	3	223	15	23	19	41	1.89
472291--472384	20	4.7	20	89	2	145	19	22	24	34	1.97
474798--474851	24	2.2	24	93	0	90	40	20	18	20	1.91
474798--474865	24	2.8	24	84	0	64	38	20	17	23	1.93
475713--475758	20	2.3	20	85	7	58	23	17	19	39	1.92
475755--475800	21	2.2	21	84	7	58	39	17	26	17	1.91
475851--476043	20	9.6	20	75	9	160	20	18	23	36	1.95
475872--476104	41	5.7	41	81	6	242	20	18	23	38	1.93
475874--476043	81	2.1	82	88	1	252	21	17	22	38	1.93
475874--476104	122	1.9	122	82	3	295	20	17	22	38	1.93
476052--476104	20	2.7	20	94	5	90	15	18	22	43	1.87
476092--476144	20	2.7	19	68	8	52	15	16	32	35	1.90
477019--477059	18	2.3	18	91	0	64	48	39	9	2	1.49
478098--478129	16	2.0	16	93	0	55	21	28	12	37	1.90
481072--481112	22	1.9	21	85	5	55	26	21	14	36	1.93
505357--505388	2	16.0	2	100	0	64	50	0	0	50	1.00
514002--514055	19	2.8	19	91	0	81	22	31	24	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514112--514170	19	3.1	19	97	0	109	23	32	22	22	1.98
516593--516640	22	2.2	23	92	7	82	39	0	0	60	0.97
516601--516648	21	2.2	21	78	10	53	41	4	0	54	1.20
517822--518270	223	2.0	224	99	0	882	25	25	26	22	2.00
538782--538904	42	2.9	41	87	9	176	22	14	17	45	1.84
546778--546818	22	1.9	21	85	5	55	65	7	7	19	1.41
555544--555928	192	2.0	194	97	2	733	38	18	14	29	1.90
557889--557921	11	2.8	12	86	9	50	18	9	0	72	1.10
561360--561385	12	2.2	12	100	0	52	26	0	50	23	1.50
566766--566792	13	2.1	13	100	0	54	7	14	29	48	1.71
580917--580960	21	2.1	21	95	0	79	20	20	15	43	1.88
580924--580970	21	2.2	21	84	0	58	25	21	17	36	1.94
580852--581043	20	9.6	20	74	11	126	32	23	15	29	1.95
581934--581989	24	2.3	24	87	0	76	26	19	17	35	1.94
581948--582001	24	2.2	24	90	0	81	22	16	20	40	1.91
583410--583447	20	1.9	20	100	0	76	13	18	26	42	1.87
584999--585097	21	4.7	21	70	19	82	21	18	35	25	1.95
584979--585097	42	2.8	42	82	9	145	20	19	36	23	1.95
587262--587304	20	2.2	19	83	4	50	13	20	23	41	1.88
587564--587610	22	2.1	22	96	0	85	25	12	38	23	1.90
587738--587818	20	4.1	20	87	6	119	18	18	24	38	1.93
587867--587920	20	2.7	20	77	11	74	25	14	31	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592511--592536	13	2.0	13	100	0	52	23	15	23	38	1.92
592819--592866	24	2.0	24	87	0	69	35	8	10	45	1.68
594703--594781	33	2.3	35	87	8	110	32	6	21	39	1.79
598765--598832	32	2.0	34	86	8	95	36	7	10	45	1.66
604599--604683	34	2.5	34	94	0	143	15	24	23	36	1.93
604753--604801	23	2.1	23	92	0	80	8	22	46	22	1.77
605258--605616	172	2.1	173	91	1	578	39	5	18	37	1.73
605670--606299	37	15.7	41	80	12	381	49	5	3	40	1.45
605710--606350	14	44.9	14	69	17	138	49	5	3	41	1.42
605713--606350	8	83.2	8	68	22	158	50	5	3	41	1.42
605747--606227	37	12.7	37	81	13	489	49	6	3	40	1.44
606023--606329	65	4.6	66	82	14	407	49	5	4	41	1.44
605716--606350	237	2.6	238	91	4	968	50	5	3	40	1.43
605758--606329	200	2.8	197	93	3	912	50	5	3	40	1.44
609764--609812	18	2.7	18	100	0	98	26	34	14	24	1.94
612757--612809	25	2.1	25	82	0	61	39	13	5	41	1.68
613580--613634	16	3.5	16	73	11	60	32	0	1	65	1.03
613580--613648	16	4.3	15	73	12	57	37	0	1	60	1.06
613564--613634	32	2.2	31	85	5	88	30	0	4	64	1.12
615344--615384	8	5.2	8	82	5	57	36	29	0	34	1.58
620806--620850	22	2.0	22	95	0	81	40	22	6	31	1.80
623848--623886	2	19.5	2	100	0	78	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627846--627877	16	2.0	16	100	0	64	12	6	12	68	1.37
628379--628414	2	18.0	2	100	0	72	50	0	0	50	1.00
629665--629727	11	5.9	11	73	14	60	57	1	1	39	1.18
629911--629959	20	2.5	20	80	12	64	77	4	6	12	1.09
630482--630539	2	29.0	2	100	0	116	50	0	0	50	1.00
631108--631140	15	2.1	16	88	5	50	69	0	3	27	1.03
632619--632663	2	24.0	2	79	20	53	51	0	2	46	1.13
632654--632731	39	2.0	39	97	0	147	37	10	19	33	1.85
639801--639856	26	2.2	25	83	3	67	39	1	0	58	1.08
645131--645161	2	15.5	2	93	0	53	51	0	3	45	1.17

Tables:   1   2   3   4   5   6   7   8   9