genome.fa.s7918.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007918.1 Hibiscus syriacus cultivar Beakdansim tig00110321_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2302251

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1022 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2228559--2228608	20	2.5	21	84	15	70	48	0	0	52	1.00
2228571--2228608	20	1.9	20	100	0	76	47	0	0	52	1.00
2228559--2228609	23	2.2	24	83	13	72	47	0	0	52	1.00
2228635--2228685	24	2.1	24	85	0	66	31	7	3	56	1.46
2228691--2228715	2	12.5	2	100	0	50	48	0	0	52	1.00
2228904--2228947	21	2.1	21	86	0	61	36	15	2	45	1.59
2229220--2229327	30	3.6	30	78	13	82	50	2	0	45	1.22
2229242--2229329	28	3.1	28	71	9	74	48	3	1	46	1.26
2229346--2229397	24	2.2	24	80	16	65	38	0	5	55	1.24
2229642--2229692	23	2.2	23	89	0	75	31	21	9	37	1.86
2229652--2229701	23	2.2	23	92	0	82	32	18	12	38	1.87
2229729--2229793	23	2.8	23	85	0	85	38	13	4	43	1.65
2229750--2229802	23	2.3	23	87	6	72	37	18	5	37	1.75
2229642--2229912	110	2.5	110	90	0	434	33	15	9	41	1.80
2229848--2229923	23	3.3	23	92	0	125	35	21	6	36	1.79
2231721--2231761	18	2.3	18	91	4	66	29	4	2	63	1.28
2234312--2234390	29	2.7	29	92	0	122	37	8	22	30	1.85
2238023--2238053	16	1.9	16	93	0	53	19	6	6	67	1.35
2242659--2242787	64	2.0	64	100	0	258	27	20	22	29	1.98
2246259--2246320	23	2.5	24	78	19	58	50	1	0	48	1.10
2246388--2246487	54	1.9	50	82	11	121	48	2	2	48	1.24
2246477--2246549	13	5.8	13	72	18	64	50	2	0	46	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2246511--2246555	23	2.0	23	90	0	72	53	2	0	44	1.13
2246595--2246671	29	2.7	29	84	9	88	51	3	0	44	1.19
2246623--2246670	14	3.4	14	76	2	51	56	0	0	43	0.99
2246785--2246841	22	2.5	23	74	8	62	50	8	1	38	1.44
2252973--2253002	14	2.2	14	94	5	53	30	26	10	33	1.89
2258273--2258309	8	4.3	9	86	10	51	51	0	0	48	1.00
2258277--2258312	8	4.4	8	89	3	54	52	0	0	47	1.00
2263384--2263416	16	2.0	17	94	5	59	66	0	0	33	0.92
2265749--2265785	19	1.9	19	94	0	65	32	29	16	21	1.95
2265811--2265876	20	3.3	20	70	16	55	30	24	18	27	1.98
2265811--2265955	40	3.5	40	76	13	152	33	23	17	25	1.96
2265819--2265955	21	6.7	20	75	14	68	34	22	17	25	1.96
2265849--2265945	21	4.7	21	87	5	126	37	23	17	21	1.94
2266136--2266195	22	2.8	22	82	5	70	23	38	16	21	1.93
2266941--2266977	14	2.6	14	100	0	74	29	0	21	48	1.50
2267114--2267209	20	4.8	20	90	0	156	30	21	18	29	1.97
2267082--2267209	40	3.4	36	88	6	125	27	21	18	32	1.97
2267114--2267209	40	2.4	40	100	0	192	30	21	18	29	1.97
2267298--2267343	20	2.3	20	84	0	56	32	17	15	34	1.91
2267314--2267596	140	2.0	140	94	0	494	44	14	12	29	1.81
2269715--2269751	14	2.6	14	91	4	56	5	21	21	51	1.68
2269941--2269993	24	2.2	24	93	0	88	39	20	18	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2270829--2270904	21	3.7	20	78	7	82	22	17	22	38	1.93
2270887--2270925	20	2.0	20	89	0	60	23	20	17	38	1.93
2270878--2270993	41	2.8	41	71	3	99	31	18	21	29	1.97
2270999--2271044	19	2.4	19	85	3	56	23	15	30	30	1.95
2271010--2271046	19	1.9	19	94	0	65	21	16	29	32	1.95
2271292--2271330	2	19.5	2	100	0	78	48	0	0	51	1.00
2275302--2275331	15	2.0	15	100	0	60	40	0	0	60	0.97
2279029--2279081	23	2.3	23	93	0	97	24	26	28	20	1.99
2281745--2281909	49	3.4	49	94	0	285	36	27	16	20	1.93
2281972--2282078	53	2.0	53	83	7	137	43	20	2	32	1.66
2289196--2289360	49	3.4	49	89	1	260	36	27	15	20	1.93
2289173--2289360	98	1.9	100	89	5	292	35	28	14	21	1.93
2289423--2289528	53	2.0	53	82	8	128	44	18	2	33	1.65
2290505--2291796	645	2.0	645	100	0	2584	36	19	8	35	1.83
2293063--2293127	21	3.1	21	100	0	130	23	27	24	24	2.00
2293795--2293882	24	3.7	24	89	3	124	28	25	26	20	1.99
2297021--2297211	96	2.0	96	94	0	337	29	12	22	35	1.90
2297235--2297297	23	2.7	23	92	0	99	19	28	26	25	1.98

Tables:   1   2   3   4   5   6   7   8   9

The End!