genome.fa.s7918.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007918.1 Hibiscus syriacus cultivar Beakdansim tig00110321_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2302251

Tables:   1   2   3   4   5   6   7   8   9   

This is table  7  of  9  ( 1022 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1748087--1748195	20	5.6	20	84	6	152	34	21	22	22	1.97
1748075--1748203	58	2.2	58	84	6	181	33	20	20	26	1.97
1748087--1748200	39	2.9	41	83	9	155	34	21	21	23	1.97
1748368--1748430	22	2.9	22	82	0	81	26	39	14	19	1.90
1750412--1750455	21	2.1	21	100	0	88	27	13	34	25	1.93
1750683--1750763	33	2.4	33	85	2	99	45	22	19	12	1.83
1750846--1750889	20	2.2	20	95	0	79	13	20	27	38	1.90
1750856--1750899	20	2.2	20	83	0	52	13	18	22	45	1.84
1751371--1751448	21	3.8	20	73	19	70	20	37	19	23	1.95
1752853--1752888	14	2.6	14	90	0	54	30	0	22	47	1.52
1752994--1753087	33	2.8	33	86	3	116	43	20	21	14	1.87
1753027--1753094	19	3.8	19	70	21	74	45	17	20	16	1.85
1753137--1753230	20	4.7	20	92	2	154	18	22	25	34	1.96
1755647--1755693	24	2.0	24	95	0	85	34	17	21	27	1.95
1755651--1755702	24	2.2	24	85	0	68	36	19	19	25	1.95
1756475--1756521	20	2.3	20	92	0	76	21	19	27	31	1.97
1756508--1756618	20	5.5	20	84	2	150	19	18	20	40	1.92
1756495--1756618	40	3.1	38	80	10	140	20	18	21	39	1.92
1756620--1756663	21	2.1	21	86	0	61	38	15	27	18	1.91
1757393--1757431	2	19.5	2	100	0	78	51	0	0	48	1.00
1761243--1761290	24	2.0	24	83	0	60	29	6	12	52	1.63
1761598--1761643	16	2.8	17	80	6	51	34	0	4	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1761635--1761685	25	2.1	24	81	3	57	52	0	3	43	1.19
1764909--1764973	27	2.4	27	100	0	130	24	20	15	40	1.91
1765619--1765681	20	2.9	20	77	15	63	23	26	19	30	1.98
1765619--1765683	24	2.9	22	80	13	71	24	26	18	30	1.98
1768838--1768880	14	3.1	14	80	3	52	48	11	4	34	1.60
1769680--1769757	20	3.8	20	75	18	70	24	25	19	30	1.98
1772034--1772085	27	1.9	27	84	7	70	46	0	0	53	1.00
1772118--1772176	26	2.2	27	85	11	77	20	5	3	71	1.20
1771493--1772617	324	3.4	326	88	4	1633	41	3	4	50	1.40
1771325--1772617	666	2.0	632	86	5	1771	42	3	4	49	1.40
1772977--1773717	306	2.3	312	87	7	1063	42	3	5	48	1.43
1773567--1773611	18	2.4	19	88	7	65	17	0	4	77	0.92
1773929--1773970	18	2.3	19	83	4	50	59	2	11	26	1.45
1786159--1786312	31	5.0	31	96	1	274	38	22	19	19	1.94
1786988--1787032	21	2.1	21	84	8	56	17	22	28	31	1.97
1795386--1795512	37	3.6	37	69	21	119	48	13	12	25	1.78
1795435--1795543	31	3.4	31	67	19	78	49	11	11	27	1.73
1795386--1795629	68	3.6	68	89	2	366	48	11	11	28	1.74
1795490--1795607	31	3.6	31	65	18	78	51	9	10	28	1.66
1804013--1804037	13	1.9	13	100	0	50	36	0	0	64	0.94
1804412--1804455	20	2.3	19	84	11	54	47	6	4	40	1.50
1804412--1804448	20	1.9	20	88	5	58	51	5	5	37	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1804544--1804587	19	2.3	18	81	11	52	31	0	18	50	1.47
1811609--1811729	41	3.0	41	92	0	197	23	18	21	37	1.94
1811619--1811726	20	5.3	20	69	8	83	19	18	22	39	1.92
1811609--1811775	41	4.1	40	82	6	185	23	17	20	37	1.94
1811609--1811776	82	2.0	81	83	6	205	24	17	20	37	1.94
1812365--1812418	6	9.0	6	100	0	108	0	16	50	33	1.46
1812500--1812796	41	7.0	41	82	7	346	36	22	20	20	1.95
1812525--1812707	20	8.9	21	71	4	140	37	22	18	21	1.94
1812728--1812792	20	3.2	20	65	10	51	35	24	20	20	1.96
1812735--1812800	21	3.2	21	67	4	62	39	25	18	16	1.91
1812940--1812992	22	2.3	23	81	15	58	52	1	0	45	1.11
1814512--1814578	34	1.9	34	82	14	84	20	13	19	46	1.83
1816026--1816061	4	9.0	4	100	0	72	75	0	0	25	0.81
1824830--1825026	54	3.6	55	79	3	220	37	13	21	28	1.91
1825831--1826027	102	1.9	103	88	1	297	37	14	19	28	1.92
1826061--1826728	113	5.7	112	78	13	495	39	16	18	25	1.91
1826283--1826728	122	3.7	121	82	7	568	41	16	17	24	1.90
1826420--1826471	17	3.1	17	73	15	63	48	9	21	21	1.78
1825831--1826612	349	2.3	337	80	10	845	38	16	19	26	1.92
1826299--1826744	238	1.9	237	85	6	630	40	16	17	24	1.90
1826666--1826997	137	2.4	137	90	0	511	39	16	17	26	1.91
1827560--1827586	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1831035--1831069	18	1.9	18	88	0	52	40	22	22	14	1.90
1831936--1831962	2	13.5	2	100	0	54	51	0	0	48	1.00
1832957--1832985	14	2.0	15	93	6	51	27	0	0	72	0.85
1833061--1833087	11	2.5	11	100	0	54	44	0	0	55	0.99
1841392--1842319	230	4.0	229	86	6	1149	22	17	17	42	1.89
1841185--1842319	451	2.5	467	81	8	1227	22	18	16	41	1.89
1852472--1852557	36	2.4	36	92	1	138	18	24	4	52	1.64
1855152--1855188	4	9.5	4	94	5	67	27	21	0	51	1.48
1856476--1856516	22	1.9	21	85	5	55	21	24	21	31	1.98
1859441--1859508	34	2.0	34	100	0	136	44	11	20	23	1.84
1865591--1865833	81	3.0	80	91	3	371	44	11	24	18	1.83
1865681--1865733	27	2.0	27	96	0	97	54	11	22	11	1.67
1873281--1873310	2	15.0	2	100	0	60	50	0	0	50	1.00
1875534--1875668	48	2.8	49	85	3	184	17	36	30	15	1.91
1875671--1875720	18	2.8	18	93	0	82	26	40	12	22	1.88
1886488--1886527	20	2.0	20	100	0	80	40	10	15	35	1.80
1888471--1888495	2	12.5	2	100	0	50	52	0	0	48	1.00
1899055--1899083	15	1.9	15	100	0	58	31	20	6	41	1.79
1902617--1903509	200	4.6	186	81	6	814	28	12	16	41	1.85
1902726--1903572	200	4.2	200	87	3	1177	28	12	16	42	1.85
1902726--1903572	400	2.1	400	89	2	1326	28	12	16	42	1.85
1903769--1903820	24	2.2	24	82	6	61	51	11	3	32	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1905810--1905942	39	3.4	38	70	13	110	36	15	4	44	1.66
1905850--1905903	19	2.8	19	75	10	56	31	18	3	46	1.67
1905802--1905959	77	2.0	78	93	1	273	36	15	4	43	1.67
1906324--1906659	161	2.1	160	89	3	516	28	14	9	47	1.75
1906485--1907079	182	3.3	182	87	6	846	27	14	12	45	1.82
1907896--1907971	36	2.1	36	100	0	152	28	10	11	48	1.73
1914606--1914656	24	2.1	24	89	10	77	25	41	11	21	1.87
1921582--1921645	32	2.0	32	90	0	101	54	3	6	35	1.41
1933396--1933456	21	3.1	19	73	26	56	59	3	6	31	1.39
1933433--1933482	26	2.0	25	88	4	73	54	4	8	34	1.49
1934379--1934425	8	5.8	8	83	14	51	68	0	0	31	0.90
1934382--1934454	29	2.4	31	84	6	96	67	1	0	31	1.00
1934382--1934458	17	4.0	18	73	20	59	66	1	0	32	1.00
1934951--1935011	22	3.0	22	77	22	69	54	0	1	44	1.10
1935188--1935227	17	2.4	17	87	8	55	75	5	15	5	1.15
1940409--1940484	29	2.7	28	71	13	66	67	3	1	27	1.17
1941828--1941942	3	38.0	3	87	6	144	60	0	0	40	0.97
1942447--1942523	36	2.1	36	92	0	127	23	20	12	42	1.87
1942229--1942699	237	2.0	240	90	2	752	29	19	14	37	1.91
1942453--1942521	16	4.1	17	71	23	56	20	20	13	46	1.83
1942455--1942525	36	2.0	36	100	0	142	19	21	11	47	1.80
1942341--1942586	125	1.9	127	87	8	360	28	19	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1942469--1942789	113	2.9	110	85	6	443	28	19	14	37	1.91
1943471--1943920	114	4.0	114	93	0	733	31	18	15	34	1.93
1944211--1944259	16	2.8	18	81	15	66	48	2	8	40	1.44
1952818--1952970	67	2.2	69	82	9	188	26	24	29	18	1.98
1953570--1953615	22	2.1	22	100	0	92	17	28	28	26	1.98
1953746--1953809	22	3.0	22	86	13	107	18	26	28	26	1.98
1953751--1953817	22	3.2	21	81	10	84	17	25	28	28	1.98
1959764--1959908	66	2.3	63	85	6	184	26	28	26	18	1.98
1960511--1960555	22	2.0	22	100	0	90	20	26	26	26	1.99
1960511--1960563	22	2.4	22	93	0	79	20	24	24	30	1.99

Tables:   1   2   3   4   5   6   7   8   9