genome.fa.s7973.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007973.1 Hibiscus syriacus cultivar Beakdansim tig00110410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1299094

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 746 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201770--201888	36	3.2	36	68	15	105	51	16	3	28	1.61
201815--201851	14	2.6	14	100	0	74	48	21	0	29	1.50
201748--201941	79	2.4	79	93	5	320	50	17	2	29	1.60
201876--201930	29	1.9	28	85	3	74	47	18	0	34	1.49
201871--201932	14	4.3	14	79	6	70	46	16	0	37	1.47
203316--203436	42	2.9	42	76	7	129	24	19	34	21	1.96
203924--203987	20	3.2	20	86	0	83	39	25	18	17	1.92
204025--204061	19	1.9	19	94	0	65	51	29	13	5	1.63
204137--204185	20	2.5	20	82	0	62	18	16	26	38	1.91
206092--206214	59	2.1	60	92	1	203	43	21	17	17	1.87
206069--206188	20	6.1	20	84	5	154	49	20	16	13	1.79
206582--206646	22	3.0	21	82	4	60	21	16	43	18	1.88
206589--206646	22	2.6	22	86	0	89	18	18	43	18	1.89
206790--206879	21	4.3	21	77	8	85	21	14	24	40	1.90
206808--206900	41	2.3	41	94	0	159	22	17	26	33	1.96
206829--206899	20	3.5	20	79	11	90	22	19	28	29	1.98
206995--207040	19	2.4	19	88	3	65	23	17	28	30	1.97
207006--207042	19	1.9	19	100	0	74	24	16	27	32	1.96
210285--210315	16	1.9	16	93	0	53	51	22	16	9	1.73
210387--210451	16	4.1	16	89	0	103	58	24	9	7	1.55
211205--211260	14	4.3	14	82	17	75	51	25	14	8	1.70
211185--211259	24	3.1	24	90	3	107	54	21	12	12	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211198--211245	10	4.4	10	78	19	51	54	22	12	10	1.68
211909--211957	14	3.5	14	88	5	73	44	34	0	20	1.52
214596--214665	30	2.3	31	80	2	79	18	5	1	74	1.09
214626--214688	3	21.7	3	74	18	53	22	1	0	76	0.88
214625--214677	10	5.6	10	85	14	69	22	0	0	77	0.77
214613--214688	25	3.0	24	82	7	71	21	2	1	75	1.00
214625--214731	9	11.6	9	75	16	71	20	4	0	74	0.99
214639--214731	17	5.8	16	73	10	75	19	5	0	75	0.99
214629--214691	22	2.8	22	81	15	67	20	1	0	77	0.85
214614--214727	10	11.4	10	71	20	53	19	5	0	74	1.06
214648--214750	56	1.9	54	82	11	131	20	5	0	73	1.03
216570--216619	19	2.4	19	83	16	55	18	20	6	56	1.62
217834--217896	8	7.8	8	80	8	65	82	4	11	1	0.88
217821--217896	16	4.6	16	76	15	66	78	5	14	1	0.98
217834--217896	12	5.3	11	74	22	56	82	4	11	1	0.88
217834--217909	24	3.1	24	82	3	80	80	5	11	2	0.98
218926--218961	18	2.0	18	94	0	63	16	8	33	41	1.78
219316--219472	72	2.1	76	82	6	189	29	15	13	41	1.86
219321--219497	72	2.5	72	80	10	175	30	15	14	40	1.86
219480--219550	36	2.0	36	88	0	106	25	21	14	39	1.90
219882--220098	106	2.0	106	92	0	362	34	24	19	22	1.97
222210--222275	3	21.7	3	83	14	82	27	1	0	71	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222206--222275	29	2.4	28	88	9	97	27	1	0	71	0.94
222205--222276	26	2.7	27	83	14	89	26	1	0	72	0.93
226162--226201	21	1.9	21	89	0	62	32	12	50	5	1.62
227008--227048	18	2.3	18	87	4	57	29	7	2	60	1.36
232351--232419	22	3.3	21	84	6	77	40	1	1	56	1.17
233174--233262	44	2.0	44	100	0	178	43	17	13	24	1.85
233258--233287	2	15.0	2	100	0	60	50	0	0	50	1.00
237834--237859	2	13.0	2	100	0	52	50	0	0	50	1.00
246833--246858	6	4.3	6	100	0	52	0	30	0	69	0.89
247004--247029	6	4.3	6	100	0	52	0	30	0	69	0.89
246794--247139	171	2.0	174	97	1	662	23	21	18	37	1.94
263435--263472	16	2.4	16	100	0	76	18	18	18	44	1.87
270710--271097	185	2.1	184	91	2	629	42	4	8	44	1.54
271103--271136	9	3.7	9	92	4	50	26	8	14	50	1.72
271598--271666	29	2.4	29	81	13	72	23	4	24	47	1.69
280721--280758	15	2.7	14	84	11	51	23	0	2	73	0.95
280721--280758	14	2.7	15	88	8	53	23	0	2	73	0.95
293302--293351	24	2.1	24	92	0	82	68	8	2	22	1.26
297252--297330	39	2.0	39	95	0	140	37	20	11	30	1.88
303590--303646	11	5.5	11	76	14	50	66	5	7	21	1.36
303589--303652	21	3.1	19	72	14	56	65	4	7	21	1.37
303590--303652	10	6.0	10	76	9	54	66	4	7	20	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303599--303667	31	2.2	31	79	7	77	66	5	7	20	1.37
303641--303686	21	2.2	21	92	0	74	67	6	8	17	1.39
306978--307060	36	2.3	36	81	4	96	34	21	19	24	1.96
309104--309155	19	2.7	19	100	0	104	21	17	30	30	1.96
309183--309220	20	1.9	20	88	0	58	21	15	31	31	1.94
314713--314770	2	29.0	2	100	0	116	50	0	0	50	1.00
318352--318442	21	4.3	21	90	2	130	47	20	18	13	1.82
322776--322952	36	4.9	36	87	4	250	32	22	20	23	1.98
322952--323169	56	4.0	55	88	4	248	36	16	25	21	1.94
323027--323932	55	16.4	55	82	8	784	31	15	25	27	1.96
327195--327415	117	1.9	117	82	3	275	27	14	9	48	1.74
328808--328870	26	2.4	26	97	0	117	26	22	26	23	2.00
330984--331030	24	2.0	24	86	0	67	34	4	14	46	1.64
331170--331365	59	3.3	59	85	4	272	28	16	22	32	1.96
337168--337226	29	2.0	29	100	0	118	49	13	13	23	1.78
341859--341917	29	2.0	29	96	0	109	50	11	13	23	1.74
343526--343586	16	3.8	16	86	0	86	39	14	16	29	1.88
347256--347290	14	2.5	14	90	0	52	62	20	8	8	1.49
347284--347334	20	2.5	20	83	0	66	52	15	17	13	1.74
347560--347614	28	2.0	28	96	0	101	61	20	5	12	1.50
347819--347849	16	1.9	16	93	0	53	19	6	22	51	1.69
348928--348972	12	4.0	12	75	16	51	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349007--349087	22	3.6	22	73	11	67	48	0	1	50	1.08
349054--349134	27	3.0	26	77	12	83	46	1	1	50	1.17
349057--349144	27	3.3	25	78	12	77	44	1	2	52	1.21
349206--349250	23	1.9	23	86	13	65	44	0	0	55	0.99
349202--349257	29	2.0	27	89	10	85	44	0	0	55	0.99
351545--351632	32	2.8	32	82	3	97	27	26	27	19	1.99
351577--351662	32	2.7	32	87	0	118	27	24	27	19	1.99
352740--352812	27	2.7	27	80	6	76	21	10	21	45	1.83
352826--352872	18	2.6	18	96	0	85	29	12	2	55	1.49
353680--353723	22	2.0	22	86	8	63	38	15	22	22	1.92
353682--353724	13	3.1	13	78	18	50	39	16	25	18	1.91
358531--358575	12	3.8	12	80	19	58	31	0	0	68	0.89
358531--358583	24	2.2	24	90	6	81	30	0	0	69	0.88
358566--358656	13	7.2	13	70	16	57	39	0	1	59	1.05
358541--358607	23	2.9	24	82	4	66	40	0	0	59	0.97
358570--358639	23	2.8	25	83	10	83	45	0	1	52	1.09
358539--358643	12	8.7	12	75	14	92	39	0	0	60	1.04
358644--358713	18	3.6	20	78	20	69	37	1	0	61	1.05
358644--358691	19	2.4	21	76	20	57	41	2	0	56	1.11
360905--360981	29	2.7	29	97	0	145	14	35	27	23	1.93
361037--361074	14	2.7	14	87	0	58	7	28	39	23	1.83
362488--362522	17	2.1	17	100	0	70	34	22	5	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370240--370496	30	8.5	30	78	5	214	39	7	0	51	1.36
370481--370532	23	2.2	24	82	6	61	50	9	0	40	1.35
370462--370537	24	3.2	23	77	5	71	43	7	0	48	1.32
370565--370675	30	3.7	30	82	1	123	51	0	5	43	1.24
370570--370718	30	5.0	30	75	5	122	53	0	8	38	1.36
370687--370757	24	2.8	26	75	12	69	56	0	7	36	1.27
371342--371372	16	1.9	16	100	0	62	25	9	19	45	1.81
372490--372525	19	1.9	18	94	5	63	63	0	2	33	1.08
374988--375018	15	2.1	15	100	0	62	48	12	19	19	1.81
376005--376062	23	2.5	23	77	0	62	51	13	24	10	1.72

Tables:   1   2   3   4   5   6   7