genome.fa.s7973.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007973.1 Hibiscus syriacus cultivar Beakdansim tig00110410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1299094

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 746 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1128966--1129086	55	2.2	55	82	5	138	29	18	19	33	1.95
1138056--1138289	55	4.3	55	86	1	290	27	17	19	35	1.94
1138044--1138315	110	2.5	110	82	4	325	29	16	18	34	1.93
1142581--1142763	7	25.1	7	68	19	83	38	4	4	51	1.45
1142574--1142747	9	18.6	9	67	20	63	38	4	5	51	1.45
1142653--1142754	38	2.8	37	78	15	113	41	4	4	49	1.46
1142686--1142763	30	2.8	28	75	19	74	39	3	3	52	1.38
1142956--1142996	22	1.9	22	90	5	66	31	29	12	26	1.92
1143576--1143652	18	4.1	18	84	12	109	28	31	20	19	1.97
1143571--1143655	40	2.1	40	91	0	143	30	28	18	22	1.97
1143806--1143876	18	3.7	18	75	14	70	32	30	18	18	1.95
1143806--1143881	40	1.9	40	88	0	116	32	28	18	19	1.96
1143580--1144021	226	2.0	226	97	0	839	32	25	11	30	1.92
1145228--1145280	7	7.3	7	78	14	54	39	3	0	56	1.17
1156246--1156297	21	2.5	21	96	0	95	46	0	28	25	1.53
1159144--1159263	56	2.1	54	78	14	127	38	4	3	54	1.36
1159144--1159263	7	16.1	7	71	22	77	38	4	3	54	1.36
1160921--1160957	20	1.9	19	89	10	58	45	10	24	18	1.81
1165044--1165126	42	2.0	42	82	0	103	32	13	24	30	1.93
1168715--1168785	24	3.0	24	72	4	81	25	12	15	46	1.81
1172138--1172225	31	2.9	31	86	1	124	17	6	18	57	1.60
1174818--1174852	16	2.3	15	90	5	52	37	14	28	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1178581--1178616	18	1.9	19	94	5	65	41	8	0	50	1.33
1179576--1179614	21	1.9	20	89	5	60	51	5	0	43	1.24
1179910--1179942	17	2.0	16	94	5	57	60	24	12	3	1.46
1180663--1180719	27	2.0	26	83	12	69	40	0	1	57	1.09
1180761--1180815	14	4.1	13	75	15	58	36	1	0	61	1.06
1180774--1180825	27	2.0	27	85	7	72	42	3	0	53	1.19
1180750--1180835	40	2.1	40	81	10	95	45	2	0	52	1.13
1180960--1181042	33	2.5	34	84	3	107	45	3	1	49	1.27
1181240--1181306	21	3.2	21	93	0	107	17	28	17	35	1.93
1181303--1181396	20	4.7	20	86	2	143	39	19	20	21	1.93
1181303--1181396	41	2.3	41	88	1	145	39	19	20	21	1.93
1181949--1182027	20	3.9	21	86	5	94	51	17	18	11	1.75
1182004--1182084	33	2.5	33	83	0	99	46	20	19	12	1.82
1182080--1182178	19	5.1	19	85	4	135	13	22	18	46	1.83
1183870--1184243	94	4.1	93	94	2	614	21	12	19	46	1.83
1184339--1184429	19	5.0	19	74	15	84	48	25	19	6	1.73
1184375--1184429	20	2.8	20	91	2	85	47	27	18	7	1.74
1184375--1184438	19	3.3	19	85	8	85	45	26	17	10	1.81
1184435--1184594	19	8.8	19	75	15	151	10	22	20	46	1.81
1184459--1184513	14	3.6	14	73	21	56	9	23	21	45	1.80
1184438--1184570	33	3.8	33	85	11	194	9	23	21	45	1.81
1184438--1184594	33	4.3	37	87	8	177	10	22	20	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1185047--1185113	21	3.2	21	66	6	55	23	35	20	19	1.95
1184995--1185113	42	2.8	42	81	5	107	22	36	18	22	1.95
1186594--1186659	19	3.7	19	76	19	79	45	21	22	10	1.82
1186704--1186782	19	4.4	19	73	16	78	16	20	18	44	1.87
1186674--1186762	33	2.7	33	91	0	133	13	21	17	47	1.82
1189065--1189091	14	1.9	14	100	0	54	7	11	29	51	1.64
1189291--1189344	24	2.2	24	93	0	90	40	20	18	20	1.91
1189291--1189358	24	2.8	24	84	0	64	38	20	17	23	1.93
1190202--1190348	20	7.3	20	88	3	156	29	19	19	31	1.96
1190333--1190364	15	2.1	15	94	0	55	31	18	18	31	1.95
1190545--1190642	22	4.1	23	75	17	76	45	2	1	51	1.19
1192223--1192254	13	2.4	13	94	5	55	56	0	0	43	0.99
1193768--1193811	20	2.2	20	95	0	79	22	22	13	40	1.89
1194707--1194903	41	4.8	41	73	12	136	32	16	21	28	1.95
1194704--1194941	123	1.9	122	81	6	284	32	16	21	29	1.95
1195340--1195390	22	2.3	22	96	0	93	41	9	13	35	1.78
1196691--1196738	21	2.3	21	85	0	60	31	22	14	31	1.94
1197534--1197640	55	1.9	56	83	5	137	33	19	9	37	1.84
1197606--1197730	56	2.2	56	84	0	151	31	15	13	40	1.86
1209716--1209797	15	5.1	16	72	8	60	34	0	2	63	1.08
1209754--1209797	22	2.0	23	86	4	63	27	0	2	70	0.99
1210194--1210247	28	1.9	28	81	7	65	48	9	14	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1216134--1216466	82	4.0	82	84	1	364	35	17	18	29	1.93
1216266--1216405	41	3.4	41	63	18	101	36	17	20	26	1.94
1216897--1216948	27	1.9	27	92	0	86	19	11	19	50	1.77
1221772--1222254	39	13.1	36	83	11	479	45	3	6	44	1.47
1221957--1222012	27	2.1	27	90	6	89	39	1	7	51	1.40
1222250--1222298	19	2.6	19	87	6	64	32	0	2	65	1.04
1222266--1222307	7	6.1	7	91	8	61	28	0	0	71	0.86
1223519--1223560	19	2.3	19	88	8	61	16	2	7	73	1.15
1223556--1223601	4	11.5	4	90	9	60	21	0	4	73	1.00
1223534--1223601	32	2.1	32	86	5	93	20	1	4	73	1.08
1223722--1223774	19	2.5	21	88	11	74	18	9	0	71	1.12
1223780--1223813	11	3.2	10	91	8	50	20	0	0	79	0.73
1223906--1223946	20	2.0	20	85	4	55	34	4	7	53	1.50
1226471--1226733	95	2.7	94	86	5	339	33	17	17	31	1.93
1227859--1228925	84	12.9	84	79	5	1016	30	25	18	25	1.98
1227859--1228993	167	6.8	168	80	4	1108	31	25	18	25	1.98
1229591--1229803	37	5.8	36	86	9	270	45	3	7	44	1.47
1229580--1229948	110	3.3	109	78	17	354	43	3	7	45	1.49
1229592--1229947	73	4.8	72	78	16	333	44	3	7	45	1.47
1229764--1229831	27	2.5	28	86	9	97	41	2	5	50	1.42
1229728--1229853	64	2.0	63	86	7	175	43	3	6	46	1.45
1229773--1229845	27	2.6	26	83	14	83	43	2	5	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1229835--1229859	2	12.5	2	100	0	50	52	0	0	48	1.00
1229803--1229897	44	2.1	45	84	5	122	43	3	6	47	1.44
1229845--1229947	39	2.6	39	77	14	97	41	3	8	45	1.53
1229947--1230002	16	3.6	16	87	4	60	32	0	1	66	1.03
1229655--1229972	149	2.2	141	80	14	318	42	3	6	47	1.47
1231217--1231287	10	7.1	10	71	17	58	16	2	4	76	1.07
1231231--1231292	14	4.2	14	76	10	52	19	3	3	74	1.10
1231236--1231292	4	15.0	4	77	14	50	19	3	3	73	1.12
1231361--1231392	12	2.5	13	95	5	57	18	6	0	75	1.01
1231429--1231483	21	2.5	20	80	13	56	16	10	1	70	1.23
1232755--1232909	20	7.7	20	80	5	159	27	25	20	27	1.99
1232755--1232909	40	3.8	40	80	5	177	27	25	20	27	1.99
1233084--1233148	22	3.0	22	88	4	96	24	40	15	20	1.91
1233075--1233160	22	4.0	22	85	7	88	23	40	15	20	1.90
1233564--1233616	20	2.7	20	84	0	70	16	16	26	39	1.91
1235626--1235679	20	2.7	20	94	0	90	20	18	24	37	1.94
1237700--1237763	19	3.3	20	85	6	80	18	18	25	37	1.94
1237700--1237752	20	2.7	19	91	2	79	20	18	22	37	1.94
1238278--1238359	42	2.0	42	82	4	103	21	35	19	23	1.96
1239754--1239815	14	4.3	14	73	6	52	38	1	14	45	1.55
1239916--1239967	20	2.6	20	84	6	70	44	26	19	9	1.81
1240010--1240234	20	11.9	20	75	11	204	26	19	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1239970--1240152	74	2.5	74	92	0	303	26	20	19	33	1.97
1240010--1240234	114	2.0	114	86	1	317	26	19	21	33	1.97
1240205--1240474	140	1.9	140	99	0	531	42	15	13	28	1.85
1243190--1243214	12	2.1	12	100	0	50	44	8	24	24	1.80
1243703--1243780	20	3.9	20	96	0	138	25	20	28	25	1.99
1243774--1243817	20	2.2	20	83	0	52	36	20	6	36	1.79
1243789--1243832	20	2.1	21	95	4	81	29	18	11	40	1.85
1243819--1243871	21	2.5	21	87	0	79	33	20	24	20	1.97
1245622--1245705	27	3.1	26	68	21	73	14	5	21	58	1.57
1245593--1245705	55	2.1	55	98	0	217	15	4	23	57	1.56

Tables:   1   2   3   4   5   6   7