genome.fa.s7973.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007973.1 Hibiscus syriacus cultivar Beakdansim tig00110410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1299094

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 746 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
852024--852071	3	15.7	3	91	4	78	29	0	0	70	0.87
856940--857054	37	3.1	37	87	2	178	29	20	13	37	1.90
857191--857501	84	3.7	84	80	5	290	32	23	19	25	1.98
857730--857787	3	19.3	3	86	10	75	29	0	0	70	0.87
860284--860343	20	2.9	21	80	14	70	71	0	3	25	1.01
860294--860378	10	8.8	9	70	24	50	72	1	3	22	1.06
868247--868285	21	1.9	20	84	5	51	23	0	12	64	1.28
876647--876685	17	2.3	17	90	0	60	33	0	2	64	1.08
885368--885406	20	2.1	19	85	9	53	58	7	30	2	1.39
886266--886349	43	2.0	43	95	0	150	29	10	13	46	1.76
889908--889935	2	14.0	2	100	0	56	50	0	0	50	1.00
897388--897421	16	2.1	16	94	0	59	32	26	8	32	1.87
900154--900221	22	3.0	22	97	2	127	26	27	26	19	1.99
900435--900493	30	2.0	30	93	0	100	33	23	3	38	1.72
900859--901030	66	2.6	66	84	8	206	17	27	26	28	1.98
905633--905700	22	3.0	22	93	2	118	27	26	25	20	1.99
905914--905972	30	2.0	30	93	0	100	33	23	3	38	1.72
906339--906511	67	2.6	67	85	6	208	17	27	27	27	1.98
907238--907276	19	2.1	19	90	9	62	69	10	2	17	1.28
909319--909367	15	3.3	15	97	0	89	30	6	4	59	1.41
919034--919151	61	1.9	61	84	6	159	16	27	33	21	1.95
919777--919819	20	2.2	20	86	0	59	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
923070--923527	138	3.3	137	86	3	645	25	19	21	32	1.97
923666--923716	23	2.2	23	82	6	59	49	0	19	31	1.49
924538--924577	21	1.9	21	89	0	62	22	22	35	20	1.96
924575--924661	42	2.1	41	82	6	104	25	21	29	22	1.99
926363--926466	30	3.4	30	76	14	99	56	0	0	42	1.05
926439--926478	20	1.9	22	90	10	66	65	2	0	32	1.06
926685--926813	61	2.1	61	85	7	174	21	34	24	20	1.97
931460--931518	23	2.8	21	78	16	68	23	20	30	25	1.98
931740--931779	21	1.9	21	89	0	62	50	10	10	30	1.69
932901--932948	19	2.5	20	82	3	62	29	12	6	52	1.63
936400--936566	79	2.1	78	85	3	226	30	11	7	49	1.68
937025--937154	4	33.0	4	89	3	120	43	28	6	20	1.78
943464--943540	19	3.9	19	80	11	93	42	3	1	51	1.28
945527--945589	30	2.1	29	88	2	90	23	30	19	26	1.98
948734--948776	17	2.5	17	88	3	59	30	13	23	32	1.93
953218--953273	16	3.3	16	68	22	51	19	23	8	48	1.77
953349--953515	91	1.8	92	89	3	266	24	19	13	41	1.88
953144--954113	332	2.8	332	85	6	1201	25	21	17	36	1.94
953673--953847	91	1.9	91	88	3	262	22	22	15	39	1.91
953544--953977	227	1.9	221	90	3	690	25	21	16	36	1.94
953765--954113	136	2.6	136	92	0	556	24	22	17	35	1.95
954995--955069	7	10.3	7	75	11	53	10	12	0	77	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
954989--955069	19	4.2	20	78	18	73	9	13	0	76	1.02
955008--955080	15	4.7	15	80	15	78	8	13	1	76	1.07
955008--955081	16	4.8	16	80	14	84	8	13	1	77	1.06
955013--955080	31	2.2	31	86	5	93	8	13	1	76	1.08
954987--955086	24	4.4	24	78	10	88	8	14	1	77	1.05
966542--966584	14	3.1	13	80	12	50	69	4	2	23	1.18
969332--969388	26	2.2	26	96	0	105	35	3	24	36	1.73
973910--973948	19	2.1	19	95	0	69	17	30	20	30	1.96
979680--979738	28	2.1	29	84	9	77	71	0	1	27	0.96
979677--979751	14	6.2	12	70	25	52	70	0	2	26	1.00
979705--979751	21	2.5	19	78	18	53	70	0	4	25	1.05
980421--980637	76	2.9	76	88	4	305	57	11	0	29	1.41
982319--982350	14	2.3	14	94	0	55	68	0	9	21	1.17
985408--985441	17	2.0	17	94	0	59	76	2	0	20	0.92
986037--986257	76	2.9	75	86	6	295	56	12	0	30	1.42
992747--992875	39	3.3	39	81	6	163	16	27	24	31	1.96
999162--999473	75	4.2	74	88	1	392	41	8	14	34	1.78
999162--999494	150	2.2	150	86	0	450	41	9	14	34	1.78
1000068--1000317	107	2.3	108	85	0	322	36	11	12	40	1.79
1000188--1000572	211	1.8	210	85	1	538	33	13	12	41	1.81
1006960--1006998	13	3.0	13	80	0	51	20	7	23	48	1.75
1019587--1019688	19	5.1	19	79	12	89	24	31	26	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028369--1028401	8	4.1	8	92	0	57	27	0	36	36	1.57
1036420--1036472	23	2.4	21	81	9	52	75	1	5	16	1.08
1037529--1037594	23	2.9	23	93	0	114	51	18	16	13	1.76
1046053--1046093	19	2.1	19	86	9	55	19	36	0	43	1.51
1049128--1049175	23	2.1	23	88	0	69	35	12	18	33	1.89
1049640--1049709	21	3.3	21	87	2	95	37	21	5	35	1.77
1050129--1050201	23	3.2	23	92	0	119	38	21	5	34	1.77
1050611--1050688	23	3.5	22	83	13	88	39	20	5	34	1.75
1050625--1050688	23	2.8	23	95	0	110	35	23	4	35	1.76
1049248--1051401	485	4.4	489	96	1	4000	39	11	7	41	1.69
1051101--1051173	23	3.2	23	92	0	119	38	21	5	34	1.77
1049248--1051401	972	2.2	968	96	1	3980	39	11	7	41	1.69
1053911--1055400	183	8.1	183	94	1	2578	33	16	14	35	1.90
1056603--1056683	3	27.0	3	79	0	90	24	33	6	35	1.81
1056619--1056700	36	2.3	36	91	0	128	20	32	8	37	1.83
1056607--1056700	12	7.8	12	86	0	98	22	32	7	37	1.82
1056637--1056700	18	3.6	18	75	8	67	18	32	9	39	1.83
1058294--1059121	200	4.1	200	97	0	1550	31	17	14	36	1.90
1059228--1059288	19	3.3	18	88	2	59	52	11	1	34	1.47
1059240--1059288	19	2.6	19	96	0	89	55	10	2	32	1.45
1061061--1061126	33	2.0	33	90	0	105	22	48	0	28	1.51
1061160--1061224	21	3.1	21	93	0	103	16	30	10	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1063240--1063292	24	2.2	24	83	6	63	26	5	13	54	1.60
1063437--1063492	20	2.8	19	76	7	58	21	14	8	55	1.66
1063619--1063665	20	2.3	20	89	10	78	17	19	8	55	1.67
1063404--1063877	182	2.6	181	89	2	682	27	17	13	42	1.86
1064800--1064870	31	2.3	31	90	0	106	36	21	18	23	1.95
1065827--1065865	19	2.0	20	90	5	62	35	15	2	46	1.60
1070775--1070807	6	5.5	6	92	0	57	0	18	33	48	1.48
1080356--1080403	16	3.0	16	78	6	53	20	0	14	64	1.28
1083486--1083822	114	3.0	113	84	3	419	38	11	9	40	1.73
1084137--1084179	18	2.4	18	84	7	52	65	2	9	23	1.34
1094457--1094499	18	2.4	18	84	7	52	65	2	9	23	1.34
1096338--1096386	18	2.5	20	81	15	59	26	26	18	28	1.98
1097486--1097879	114	3.4	114	78	4	389	38	13	8	38	1.76
1102217--1102256	2	20.0	2	94	0	71	50	2	0	47	1.14
1102191--1102256	16	4.1	15	81	9	53	46	4	3	45	1.38
1102904--1102978	35	2.1	35	90	0	114	33	29	26	10	1.90
1103039--1103090	24	2.2	24	82	0	59	42	15	9	32	1.79
1103077--1103145	23	3.0	23	86	2	93	39	20	15	24	1.92
1105590--1105637	10	5.6	9	85	14	50	22	22	35	18	1.96
1105591--1105649	8	7.4	8	76	21	54	22	22	38	16	1.93
1105624--1105694	13	5.1	13	79	15	70	16	19	45	18	1.86
1105624--1105685	31	2.0	31	90	0	97	14	19	46	19	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1105618--1105672	18	2.9	18	83	8	65	14	20	45	20	1.85
1106924--1106959	16	2.2	17	90	5	56	33	11	8	47	1.69
1115888--1116079	75	2.5	75	94	4	341	23	29	27	19	1.98
1121759--1121805	24	2.0	24	86	0	67	25	23	21	29	1.99
1121768--1121845	23	3.5	22	70	8	59	29	21	21	26	1.99
1123784--1123820	17	2.3	16	90	9	58	18	0	27	54	1.44
1124088--1124140	21	2.5	21	96	0	97	32	0	45	22	1.53
1124479--1124619	73	1.9	74	94	2	248	26	29	24	19	1.99
1127000--1127047	25	1.9	25	95	0	87	54	0	14	31	1.41
1128571--1128629	22	2.7	22	94	0	109	42	15	15	27	1.86

Tables:   1   2   3   4   5   6   7