genome.fa.s7973.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007973.1 Hibiscus syriacus cultivar Beakdansim tig00110410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1299094

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 746 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1245594--1245682	28	3.2	28	70	20	96	14	3	26	55	1.55
1245620--1245706	28	3.1	28	68	21	83	14	5	20	58	1.57
1250916--1250947	16	2.0	16	93	0	55	40	12	9	37	1.75
1251045--1251095	20	2.5	20	96	0	93	33	25	25	15	1.95
1254174--1254209	17	2.1	18	89	5	56	16	25	5	52	1.65
1255682--1255726	10	4.5	10	88	0	63	8	17	11	62	1.53
1256315--1256768	230	2.0	227	90	7	724	28	13	19	39	1.89
1257157--1257196	17	2.3	18	91	4	64	27	25	10	37	1.88
1257285--1257380	3	34.3	3	86	14	143	32	0	0	67	0.91
1257285--1257380	14	6.9	14	84	13	126	32	0	0	67	0.91
1257521--1257572	25	2.1	25	96	0	95	28	23	23	25	1.99
1260595--1260731	45	3.0	45	89	0	193	34	18	22	24	1.96
1260779--1261130	99	3.6	99	84	4	458	34	14	29	21	1.93
1262996--1263047	25	2.1	25	88	0	77	30	21	19	28	1.97
1263554--1263635	29	2.8	29	94	1	137	32	14	9	42	1.79
1264925--1264954	15	2.0	15	93	0	51	56	23	0	20	1.42
1268306--1268380	29	2.6	29	95	0	132	32	14	10	42	1.80
1277840--1277865	4	6.5	4	100	0	52	50	23	0	26	1.50
1278899--1278933	18	1.9	18	100	0	70	22	0	0	77	0.78
1278893--1278966	26	2.8	26	80	11	89	27	2	0	70	1.01
1279037--1279066	15	1.9	16	93	6	53	23	0	10	66	1.21
1280552--1280639	36	2.4	36	92	0	140	31	21	18	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1284820--1284915	3	31.7	3	91	2	147	35	3	0	61	1.12
1294323--1294363	20	2.0	20	86	9	57	24	19	21	34	1.97
1298573--1299011	80	5.5	82	86	8	597	26	13	22	37	1.91
1298559--1299011	159	2.9	161	85	11	607	27	13	22	37	1.91

Tables:   1   2   3   4   5   6   7

The End!