genome.fa.s7981.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007981.1 Hibiscus syriacus cultivar Beakdansim tig00110422_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1405786

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 859 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
846982--847061	19	4.5	19	80	15	107	45	21	22	11	1.83
847019--847075	14	3.7	14	75	20	60	43	22	24	8	1.81
847000--847090	33	2.8	33	96	0	164	43	21	21	12	1.85
847086--847180	19	5.5	19	68	23	84	11	25	17	45	1.82
847092--847180	33	2.7	33	98	0	169	12	24	17	44	1.83
849476--849500	12	2.1	12	100	0	50	0	28	0	72	0.86
849675--849728	24	2.2	24	90	0	81	40	20	16	22	1.91
850513--850564	21	2.5	21	87	3	70	38	17	23	21	1.93
850553--850631	20	3.9	20	77	9	70	35	22	18	22	1.96
850839--850908	20	3.5	20	73	7	79	38	24	20	17	1.93
850935--850984	14	3.0	17	68	26	52	12	18	18	52	1.75
853020--853073	20	2.7	20	88	0	81	37	24	24	14	1.93
853018--853156	19	7.8	18	69	20	78	42	20	21	15	1.89
853060--853151	33	2.8	32	88	3	139	45	19	19	15	1.85
853163--853260	18	5.8	18	70	22	86	13	19	20	46	1.83
853188--853244	14	3.7	14	72	20	51	12	15	21	50	1.76
853168--853260	33	2.8	33	96	1	170	13	19	20	46	1.84
853245--853288	20	2.2	20	88	4	63	18	25	20	36	1.95
853254--853299	20	2.3	20	84	0	56	17	21	23	36	1.94
853781--853825	18	2.5	18	88	0	72	13	15	44	26	1.83
855678--855729	20	2.6	20	93	0	86	25	21	28	25	1.99
855657--855794	61	2.3	61	83	0	177	23	16	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
855657--855791	20	6.7	20	77	7	85	24	17	23	34	1.95
855862--855902	21	2.0	21	85	0	55	34	29	17	19	1.94
857464--857526	26	2.3	28	76	13	69	69	1	7	20	1.22
857991--858029	22	1.9	20	85	15	53	51	0	0	48	1.00
858704--858748	21	2.1	21	88	8	65	31	22	20	26	1.98
858825--858875	25	2.0	25	92	0	84	56	7	5	29	1.51
860586--860960	137	2.7	137	90	0	572	27	16	17	38	1.91
864917--865075	80	2.0	80	88	2	239	50	9	15	25	1.73
869734--870387	243	2.7	245	81	5	815	41	17	18	22	1.90
887219--887303	29	3.0	28	77	6	82	58	21	5	14	1.56
889536--889574	16	2.4	16	100	0	78	23	25	20	30	1.98
890380--890430	23	2.2	23	82	0	57	39	23	13	23	1.91
893180--893507	46	7.0	46	80	9	306	45	6	23	24	1.75
893180--893507	95	3.5	92	77	9	317	45	6	23	24	1.75
893201--893457	141	1.8	138	84	7	349	45	5	23	24	1.74
893737--893985	93	2.7	93	81	9	269	27	3	29	39	1.73
894406--894543	16	9.9	15	68	26	56	46	3	5	44	1.45
894418--894477	22	2.9	22	72	25	67	48	5	5	41	1.47
894504--894660	11	13.2	11	72	18	95	43	1	7	47	1.41
894485--894670	83	2.3	79	87	7	250	44	2	6	46	1.43
894538--894669	50	2.6	51	86	8	182	43	2	6	47	1.40
896051--896211	65	2.5	64	87	7	229	34	21	15	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
904658--904818	65	2.5	65	88	5	238	32	21	17	27	1.96
904658--904836	65	2.8	66	84	7	235	31	22	17	27	1.97
906773--906822	23	2.1	23	85	7	64	28	14	24	34	1.93
915437--915471	18	1.9	18	88	0	52	28	17	0	54	1.43
916621--916703	19	4.6	19	82	14	113	18	34	28	18	1.94
916645--916711	14	4.4	14	77	17	71	19	35	28	16	1.93
916627--916711	33	2.6	33	92	0	143	20	35	28	16	1.94
918389--918421	17	1.9	17	88	11	50	63	0	3	33	1.10
918498--918533	17	2.2	16	95	5	63	44	2	0	52	1.15
919414--919475	24	2.6	24	97	0	115	1	38	6	53	1.37
920451--920492	20	2.1	20	90	0	66	21	11	11	54	1.68
925993--926031	17	2.4	17	95	4	71	43	0	5	51	1.24
926063--926142	21	4.1	18	72	22	56	51	0	1	47	1.08
926058--926160	42	2.6	41	84	9	124	50	0	0	48	1.07
926177--926201	7	3.6	7	100	0	50	32	0	12	56	1.36
926271--926332	14	4.4	14	72	11	54	41	3	8	46	1.49
926273--926363	43	2.2	40	88	7	128	45	4	6	43	1.50
926343--926393	15	3.3	15	71	15	50	50	3	3	41	1.39
926375--926477	22	4.8	22	75	11	88	48	8	5	36	1.58
926404--926456	21	2.5	21	87	0	79	47	5	7	39	1.56
926402--926493	21	4.3	20	72	14	78	47	7	6	38	1.58
926499--926591	20	4.8	19	69	25	52	44	3	8	44	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
926487--926624	59	2.4	55	82	7	177	42	6	8	42	1.61
926540--926580	15	2.6	16	88	7	57	41	2	9	46	1.50
926487--926619	57	2.3	57	83	5	171	43	6	8	41	1.61
926582--926655	37	2.1	36	84	5	96	39	10	9	40	1.73
926677--926716	7	5.7	7	82	11	55	17	0	37	45	1.49
926700--926785	35	2.5	36	81	7	106	22	0	25	52	1.47
927139--927277	2	72.0	2	67	22	66	44	5	2	47	1.39
927226--927277	23	2.3	23	86	6	70	42	1	3	51	1.31
927137--927277	23	6.0	22	68	16	68	43	4	2	48	1.39
927235--927269	15	2.4	14	90	4	52	42	2	5	48	1.41
927684--927715	15	2.1	15	94	0	55	40	3	6	50	1.43
930034--930117	18	4.6	18	79	10	82	46	1	3	48	1.27
930034--930117	36	2.3	38	82	12	104	46	1	3	48	1.27
930065--930120	2	28.5	2	75	10	53	48	0	1	50	1.11
930083--930123	21	2.0	21	90	0	64	46	0	0	53	1.00
932110--932154	20	2.2	20	96	0	81	17	24	0	57	1.40
937120--937153	16	2.1	17	89	10	54	23	0	5	70	1.09
947248--947284	19	2.0	18	94	5	65	21	43	21	13	1.87
950235--950264	15	2.0	15	93	0	51	36	20	3	40	1.69
950892--950926	18	1.9	18	88	0	52	48	0	0	51	1.00
951232--951263	14	2.3	14	94	0	55	9	15	25	50	1.74
951878--951951	10	7.6	10	67	27	52	9	9	20	60	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951883--951947	16	4.1	16	87	0	103	7	10	21	60	1.55
952017--952049	16	2.1	16	94	0	57	6	15	21	57	1.59
957339--957409	30	2.2	33	78	9	85	45	0	12	42	1.42
957697--957736	21	1.9	21	94	0	71	27	15	17	40	1.89
957816--957856	21	2.0	21	90	0	64	17	17	26	39	1.91
959039--959081	18	2.4	18	100	0	86	44	4	16	34	1.68
959227--959279	21	2.5	21	87	0	79	32	32	18	16	1.94
959275--959672	42	9.5	42	88	4	492	20	19	24	35	1.96
959283--959614	63	5.3	62	80	9	363	21	19	25	34	1.96
959275--959572	105	2.9	105	85	8	421	20	19	24	34	1.96
960304--960490	21	9.1	20	70	9	81	27	21	17	32	1.96
960396--960492	20	4.8	19	75	16	81	26	23	16	32	1.96
961007--961073	19	3.5	19	85	2	89	47	25	16	10	1.78
961069--961119	19	2.6	19	87	3	66	13	23	23	39	1.91
961069--961148	20	4.1	19	82	6	97	15	22	17	45	1.85
964710--964745	14	2.6	14	95	0	63	30	0	25	44	1.54
964852--964910	19	3.4	18	71	22	54	47	20	20	11	1.81
964870--964926	14	3.7	14	75	20	60	43	22	24	8	1.81
964852--964932	33	2.5	33	95	0	144	45	20	22	11	1.82
964861--964912	19	3.0	19	73	21	60	46	21	23	9	1.80
964939--965067	33	3.9	32	85	8	179	14	24	18	42	1.88
964934--965066	66	2.0	66	92	0	221	16	23	18	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964943--965067	19	7.4	19	64	24	82	15	23	18	43	1.87
967361--967385	12	2.1	12	100	0	50	0	28	0	72	0.86
967560--967613	24	2.2	24	90	0	81	40	20	16	22	1.91
968167--968200	12	2.9	12	91	4	52	38	5	38	17	1.74
968396--968447	21	2.5	21	87	3	70	38	17	23	21	1.93
968432--968523	20	4.6	20	73	2	76	39	21	18	20	1.93
968795--968868	19	4.5	16	83	16	66	13	20	18	47	1.82
968791--968858	19	3.8	19	87	12	101	13	22	17	47	1.82
970898--970948	20	2.5	20	90	0	84	39	23	23	13	1.91
970915--971025	19	6.4	18	74	21	94	45	19	19	15	1.86

Tables:   1   2   3   4   5   6   7   8