genome.fa.s7981.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007981.1 Hibiscus syriacus cultivar Beakdansim tig00110422_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1405786

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 859 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970952--971041	14	5.8	14	74	21	63	48	20	17	13	1.80
970935--971055	33	3.7	33	86	2	172	47	21	18	13	1.82
971057--971149	19	5.4	18	69	24	76	15	19	19	46	1.84
971077--971133	14	3.7	14	75	20	60	10	15	22	50	1.74
971058--971149	33	2.8	33	96	0	166	14	19	19	46	1.83
971134--971177	20	2.2	20	84	4	54	20	25	18	36	1.95
971665--971709	18	2.5	18	88	0	72	13	15	44	26	1.83
973040--973085	20	2.3	20	88	0	65	36	28	17	17	1.92
973581--973632	20	2.6	20	93	0	86	25	21	28	25	1.99
973641--973694	20	2.7	20	91	0	81	27	18	20	33	1.96
973560--973697	61	2.3	61	83	0	177	24	17	22	35	1.95
973683--973734	20	2.5	21	87	3	70	19	25	17	38	1.93
974113--974229	50	2.3	50	81	4	146	18	33	26	21	1.97
974140--974258	50	2.4	48	81	13	134	18	30	29	21	1.97
974351--974390	20	2.1	19	90	4	62	35	22	0	42	1.54
974515--974737	112	2.0	111	95	0	401	35	7	11	45	1.69
976244--976287	18	2.4	18	92	3	70	27	31	15	25	1.96
980020--980184	80	2.1	80	95	0	294	33	16	19	30	1.94
987889--987922	8	4.0	8	85	14	50	82	2	0	14	0.79
987880--987930	18	2.8	17	82	11	66	74	1	0	23	0.92
989023--989053	16	1.9	16	93	0	53	22	0	3	74	0.96
989622--989672	23	2.2	24	92	3	86	37	1	11	49	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
989530--989655	35	3.6	35	76	8	123	43	4	9	42	1.58
989589--989719	60	2.2	61	82	9	164	45	4	6	43	1.51
989645--989735	36	2.5	35	81	10	112	43	5	8	41	1.59
989552--989743	94	2.0	92	84	7	244	42	5	8	43	1.58
989769--989801	17	1.9	17	93	0	57	45	3	6	45	1.43
996159--996204	22	2.0	24	91	8	78	78	8	8	4	1.09
996714--996756	1	43.0	1	80	0	50	9	0	0	90	0.45
996715--996754	7	5.9	7	88	11	57	10	0	0	90	0.47
996714--996757	9	4.9	9	82	17	56	11	0	0	88	0.51
996707--996742	16	2.2	16	90	0	54	11	2	2	83	0.86
996714--996756	16	2.8	15	89	10	61	9	0	0	90	0.45
996717--996757	20	2.0	21	95	4	75	12	0	0	87	0.53
998653--998713	16	3.8	16	78	8	52	24	6	3	65	1.32
998667--998714	16	3.1	15	80	14	53	20	6	2	70	1.19
1000849--1000902	20	2.7	20	100	0	108	25	16	27	29	1.97
1001336--1001663	103	3.2	103	97	0	620	25	12	25	36	1.91
1001674--1001740	23	2.9	23	84	0	89	17	25	25	31	1.97
1002611--1002658	23	2.1	23	88	0	69	37	6	22	33	1.80
1002687--1002745	23	2.6	23	78	5	57	44	10	15	30	1.79
1002572--1002821	87	2.9	87	93	0	437	40	12	15	31	1.85
1002845--1003337	200	2.5	198	83	5	624	30	14	14	40	1.86
1003671--1004019	125	2.8	124	91	1	545	40	15	14	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003939--1004117	98	1.8	98	90	3	290	43	13	12	30	1.81
1004716--1004761	25	2.0	24	83	12	60	56	0	0	43	0.99
1006223--1006293	3	23.7	3	94	0	124	63	1	1	33	1.12
1006609--1007271	113	5.9	112	96	0	1132	30	20	12	37	1.89
1007928--1008729	83	9.7	83	97	0	1406	36	21	14	27	1.92
1009387--1009426	20	2.0	20	90	5	62	55	10	7	27	1.60
1009766--1009842	5	15.8	5	75	23	67	0	16	0	83	0.66
1009764--1009841	8	9.8	8	77	14	81	0	16	0	83	0.65
1009763--1009844	23	3.5	22	74	19	78	0	17	0	82	0.66
1021124--1021168	25	1.9	24	82	13	58	55	0	0	44	0.99
1022604--1022681	15	5.1	17	87	9	66	60	1	0	38	1.05
1022615--1022681	3	22.7	3	88	8	102	62	1	0	35	1.04
1022923--1022972	26	1.9	26	95	0	91	30	26	6	38	1.80
1026148--1026241	35	2.6	36	80	8	95	35	10	12	41	1.78
1026139--1026241	18	5.8	18	82	2	120	34	10	12	41	1.78
1028143--1028721	200	2.9	199	81	3	601	34	20	18	27	1.96
1029466--1029555	42	2.2	42	91	2	146	37	21	17	23	1.94
1030700--1030732	17	2.0	17	88	5	50	18	0	9	72	1.10
1030950--1030977	13	2.2	13	100	0	56	28	0	0	71	0.86
1036171--1036315	4	35.0	4	78	9	103	24	2	7	65	1.30
1038411--1038469	29	2.0	29	83	0	73	16	16	10	55	1.67
1040553--1040613	23	2.7	23	82	5	79	29	26	24	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041255--1041415	63	2.5	66	83	10	194	27	19	18	34	1.95
1041930--1041955	13	2.0	13	100	0	52	69	0	30	0	0.89
1047517--1047577	23	2.7	23	97	0	113	27	27	26	18	1.98
1052336--1052518	49	3.7	49	85	2	213	36	13	20	30	1.90
1052336--1052524	50	3.8	49	84	2	216	35	14	20	29	1.92
1059042--1059161	62	1.9	62	93	3	206	40	13	21	25	1.89
1059106--1059215	49	2.2	50	88	1	168	39	11	20	28	1.88
1062567--1062728	65	2.5	65	80	6	186	29	17	22	31	1.96
1065390--1065490	23	4.6	22	73	17	86	30	21	22	24	1.99
1065390--1065490	44	2.3	43	78	11	116	30	21	22	24	1.99
1071219--1071379	65	2.5	65	84	5	202	27	18	24	29	1.98
1078957--1079156	43	4.7	42	83	1	220	34	21	21	23	1.97
1078957--1079179	43	5.2	43	81	6	213	33	21	20	24	1.97
1083002--1083225	42	5.4	42	83	2	227	28	22	17	31	1.96
1085463--1085510	24	2.0	24	83	4	60	45	6	10	37	1.64
1092685--1092750	25	2.6	25	97	0	123	34	40	12	12	1.80
1094212--1094258	18	2.7	18	86	3	69	36	6	29	27	1.82
1094650--1094997	192	1.8	194	87	5	528	42	12	11	34	1.78
1099923--1099974	21	2.5	21	81	3	61	38	19	25	17	1.93
1099963--1100016	20	2.7	20	97	0	99	31	24	18	25	1.97
1100575--1100640	18	3.5	19	83	6	80	48	25	16	9	1.76
1100643--1100724	29	2.8	29	85	5	112	10	21	30	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1100650--1100724	30	2.6	29	85	6	107	10	22	30	36	1.88
1100727--1100787	20	3.1	19	76	17	61	14	24	16	44	1.85
1102789--1102911	42	2.9	42	80	2	113	22	35	17	23	1.95
1102845--1102911	21	3.2	21	66	6	55	23	35	20	19	1.95
1104269--1104304	14	2.6	14	95	0	63	30	0	25	44	1.54
1104483--1104633	19	8.7	19	63	21	80	15	22	19	42	1.89
1104487--1104614	33	3.9	32	85	8	186	15	22	18	42	1.88
1104480--1104612	66	2.0	66	95	0	239	17	22	18	41	1.90
1106906--1106930	12	2.1	12	100	0	50	0	28	0	72	0.86
1107104--1107157	24	2.2	24	86	0	72	40	20	14	24	1.90
1108101--1108158	20	2.9	20	94	0	98	37	22	22	17	1.93
1108164--1108234	33	2.2	33	81	0	79	19	18	21	40	1.91
1108186--1108235	14	3.2	14	75	24	55	12	20	20	48	1.80
1108177--1108254	33	2.4	33	88	0	111	12	21	21	43	1.86
1108342--1108378	14	2.6	14	86	0	56	48	21	0	29	1.50
1109166--1109203	20	1.9	20	88	0	58	50	21	15	13	1.78
1109448--1109491	22	2.0	22	95	0	79	18	15	45	20	1.85
1109717--1109836	20	5.9	21	72	12	63	18	20	19	41	1.90
1109659--1109773	20	5.7	20	76	5	79	24	17	22	35	1.95
1109701--1109834	41	3.3	40	81	5	135	19	20	20	38	1.93
1109781--1109846	20	3.3	20	82	0	96	16	22	18	42	1.89
1109762--1109850	40	2.2	41	97	2	171	16	23	17	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1112317--1112344	7	4.0	7	100	0	56	57	0	0	42	0.99
1112895--1112930	18	2.0	18	100	0	72	27	22	16	33	1.95
1118257--1118288	13	2.4	14	90	10	50	68	0	6	25	1.12
1119392--1119430	18	2.2	18	95	4	71	74	0	0	25	0.82
1119400--1119439	18	2.3	18	86	4	55	77	0	2	20	0.88
1126967--1127049	31	2.6	31	84	1	94	43	10	8	37	1.70
1127634--1127690	16	3.5	16	73	7	53	70	0	1	28	0.98
1128055--1128357	164	1.9	163	86	4	432	27	19	18	34	1.95
1128092--1128371	42	6.8	41	70	14	168	28	21	17	32	1.96
1137914--1138109	43	4.6	42	74	7	137	33	22	19	24	1.97

Tables:   1   2   3   4   5   6   7   8