genome.fa.s7985.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007985.1 Hibiscus syriacus cultivar Beakdansim tig00110430_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2235968

Tables:   1   2   3   4   5   6   7   8   9   

This is table  1  of  9  ( 1062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2709--2743	18	2.1	17	89	10	54	65	5	0	28	1.15
10968--11073	39	2.7	39	81	5	124	38	13	2	45	1.58
11320--11401	26	3.3	23	78	14	76	46	2	1	50	1.22
11540--11615	31	2.5	31	86	4	109	48	9	9	32	1.67
14339--14662	172	1.9	172	80	7	381	32	23	21	22	1.98
14955--14997	12	3.6	12	83	0	59	27	0	39	32	1.57
15094--15133	21	2.0	20	85	9	55	42	0	7	50	1.30
21256--21324	32	2.2	31	82	5	86	30	4	5	59	1.40
29965--30019	21	2.5	22	80	16	62	74	0	7	18	1.04
29967--30089	20	5.9	20	69	21	67	77	1	6	14	1.05
29964--30092	39	3.2	40	72	21	99	76	1	6	15	1.05
30010--30100	25	3.8	24	69	15	62	78	3	4	14	1.04
29979--30100	49	2.3	54	78	16	121	77	2	5	14	1.07
31643--31700	3	20.7	3	73	19	54	63	0	0	36	0.94
31656--31700	14	3.3	14	90	3	65	64	0	0	35	0.94
32310--32648	124	2.7	124	87	3	495	25	17	23	33	1.96
34070--34265	95	2.1	94	88	3	295	31	18	17	31	1.95
36888--36929	14	2.9	15	79	13	52	80	4	2	11	0.95
37146--37170	13	1.9	13	100	0	50	64	4	8	24	1.38
38667--38715	22	2.1	24	85	11	66	34	0	4	61	1.15
45410--45436	6	4.5	6	100	0	54	18	18	14	48	1.82
45888--45924	20	1.9	19	89	10	58	45	10	24	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49357--49385	14	2.0	15	93	6	51	62	0	3	34	1.12
49365--49422	29	2.0	29	80	12	66	63	3	3	29	1.27
49468--49510	18	2.4	19	88	11	65	62	0	2	34	1.08
52373--52450	31	2.5	31	89	2	120	28	5	25	41	1.77
53914--53968	3	18.3	3	100	0	110	34	0	0	65	0.93
57938--57971	14	2.3	15	95	5	61	32	8	5	52	1.56
57973--58021	19	2.5	20	80	3	55	34	22	12	30	1.91
58043--58082	20	2.0	20	95	0	71	35	17	20	27	1.95
58090--58162	19	3.7	20	83	5	76	32	24	13	28	1.94
58108--58162	19	2.8	20	91	2	85	34	21	10	32	1.89
61306--61341	18	2.0	18	94	0	63	58	25	0	16	1.38
61794--61967	66	2.6	65	82	12	212	52	15	2	29	1.55
63290--63352	21	3.0	21	79	9	74	20	23	38	17	1.93
63310--63402	21	4.4	21	71	10	64	23	20	32	23	1.98
63407--63483	39	2.0	39	94	2	138	16	20	31	31	1.95
63854--63896	21	2.0	21	95	0	77	37	34	13	13	1.85
65597--65651	20	2.8	19	75	8	56	47	18	16	18	1.83
66172--66282	20	5.6	20	78	3	125	20	16	23	39	1.92
66162--66294	40	3.3	40	85	2	160	19	15	23	42	1.89
66184--66314	40	3.3	40	86	2	165	20	15	23	40	1.90
66248--66334	20	4.3	20	73	5	77	22	14	21	40	1.91
77252--77302	25	2.0	25	85	11	68	43	7	1	47	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81950--82024	39	1.9	38	82	12	91	41	1	5	52	1.33
82314--82342	13	2.1	14	93	6	51	0	17	34	48	1.47
83342--83393	23	2.2	24	82	10	70	55	23	13	7	1.63
83349--83414	23	3.0	22	78	12	66	53	21	13	12	1.72
87044--87073	12	2.5	12	100	0	60	16	16	0	66	1.25
89540--89589	12	4.4	12	80	10	52	48	42	4	6	1.46
90558--90770	108	2.0	109	83	2	268	19	15	15	49	1.80
91277--91386	55	2.0	55	100	0	220	38	18	3	40	1.68
93166--93218	15	3.6	14	78	14	54	71	1	7	18	1.19
94412--94451	21	1.9	21	85	10	55	42	0	5	52	1.23
96619--96653	3	11.7	3	100	0	70	65	0	34	0	0.93
98325--98367	21	2.0	21	90	0	68	44	9	9	37	1.69
98595--98656	28	2.3	28	78	13	69	56	1	1	40	1.19
99145--99188	20	2.2	20	87	4	61	27	2	4	65	1.23
99153--99198	20	2.2	21	92	3	76	26	0	4	69	1.07
99153--99212	20	3.0	20	83	9	68	30	0	5	65	1.14
103279--103314	3	12.0	3	87	0	54	27	0	5	66	1.13
106297--106352	27	2.1	27	83	6	69	46	1	5	46	1.36
111714--111877	83	2.0	83	87	2	240	38	5	10	45	1.63
114117--114414	146	2.0	146	99	0	587	48	9	11	30	1.70
115444--115471	13	2.2	13	100	0	56	7	14	25	53	1.66
121166--121284	30	4.0	30	95	1	195	31	25	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122833--122873	21	2.0	21	85	0	55	17	24	29	29	1.97
126360--126417	25	2.2	27	84	15	93	34	34	20	10	1.87
126366--126418	25	2.1	25	100	0	106	35	37	18	7	1.80
129033--129071	4	9.8	4	100	0	78	0	25	0	74	0.82
130459--130503	15	2.9	15	80	3	54	44	0	2	53	1.13
134133--134273	74	1.9	74	92	2	239	36	21	14	26	1.92
144912--145069	51	3.1	50	80	4	183	46	13	13	26	1.79
144886--145056	51	3.4	50	77	4	182	46	14	12	27	1.80
150309--150444	71	1.9	71	84	3	184	34	16	20	28	1.94
150865--150918	22	2.5	22	100	0	108	68	7	0	24	1.15
150862--150933	22	2.8	28	78	19	77	65	6	0	27	1.18
151148--151173	13	2.0	13	100	0	52	46	15	7	30	1.74
153068--153225	65	2.5	65	90	2	239	41	13	13	31	1.83
155975--156007	12	2.8	12	90	0	57	24	45	9	21	1.80
158905--159010	21	5.3	20	76	6	108	42	17	22	16	1.89
158905--159012	41	2.7	41	95	2	193	41	18	23	16	1.90
158983--159017	18	1.9	18	88	0	52	51	17	17	14	1.77
159005--159057	20	2.7	20	93	0	88	28	28	18	24	1.98
159245--159288	22	2.0	22	95	0	79	20	45	15	18	1.85
159553--159590	20	1.9	20	88	0	58	13	15	21	50	1.78
160910--160954	18	2.5	18	88	0	72	26	44	15	13	1.83
161436--161491	20	2.8	20	83	2	69	37	23	23	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161475--161570	19	5.6	19	67	25	70	45	20	19	13	1.84
161475--161565	32	2.8	33	89	3	148	47	20	18	13	1.82
161491--161548	14	3.9	14	77	16	62	48	22	17	12	1.80
161582--161639	14	3.9	14	77	16	62	10	17	24	48	1.78
161577--161655	32	2.4	33	93	2	133	11	18	22	46	1.81
161628--161694	19	3.5	19	85	4	80	16	23	22	37	1.94
161640--161694	20	2.8	19	89	5	83	16	25	23	34	1.95
163560--163595	14	2.6	14	90	0	54	30	0	22	47	1.52
163683--163777	38	2.7	36	85	8	115	43	18	22	15	1.88
163712--163777	19	3.5	19	100	0	132	46	16	21	15	1.83
163782--163832	20	2.5	20	87	0	75	19	21	23	35	1.96
164894--164947	24	2.2	24	90	0	81	24	16	20	38	1.92
165121--165145	12	2.1	12	100	0	50	72	0	28	0	0.86
167437--167495	19	3.4	19	73	22	74	45	18	22	13	1.84
167622--167658	14	2.6	14	91	0	65	45	24	0	29	1.53
171164--171262	33	3.0	33	89	1	135	39	26	22	12	1.89
171139--171304	20	9.1	19	75	16	136	42	22	22	12	1.87
171300--171366	19	3.5	19	85	2	89	10	16	25	47	1.78
171883--171935	20	2.7	20	93	0	88	26	20	28	24	1.99
171944--171997	20	2.7	20	97	0	99	25	18	24	31	1.97
171884--172000	61	1.9	61	85	0	162	23	17	24	33	1.97
171884--172018	61	2.2	61	81	2	155	22	20	24	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172068--172108	21	2.0	21	85	0	55	34	31	17	17	1.93
173083--173236	59	2.6	58	80	10	175	40	3	22	33	1.72
173083--173265	60	3.1	60	81	3	190	40	3	21	33	1.71
173729--173755	13	2.1	13	100	0	54	40	0	0	59	0.98
185511--185626	42	2.8	42	81	10	132	46	0	0	52	1.06
185685--185717	8	4.2	8	84	7	50	39	0	0	60	0.97
185687--185716	15	2.0	15	93	0	51	36	0	0	63	0.95
185703--185777	19	3.7	20	67	13	55	45	2	1	50	1.24
185751--185893	14	10.8	13	67	20	66	48	0	2	48	1.21
185787--185875	29	3.1	29	72	15	80	49	1	3	46	1.26

Tables:   1   2   3   4   5   6   7   8   9