genome.fa.s7985.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007985.1 Hibiscus syriacus cultivar Beakdansim tig00110430_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2235968

Tables:   1   2   3   4   5   6   7   8   9   

This is table  7  of  9  ( 1062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1414435--1414494	31	1.9	31	93	0	102	45	8	5	41	1.56
1415006--1415453	228	2.0	227	94	1	790	45	8	7	39	1.62
1415519--1415564	20	2.3	19	89	10	74	54	10	17	17	1.70
1417956--1418020	21	3.1	21	80	6	69	40	15	29	15	1.88
1418054--1418120	34	2.0	34	88	2	100	28	0	49	22	1.50
1419899--1419947	19	2.6	19	93	0	80	30	2	10	57	1.43
1420072--1421152	198	5.5	198	96	1	1992	36	15	16	32	1.90
1420072--1421152	395	2.7	397	96	1	1987	36	15	16	32	1.90
1422604--1422665	18	3.4	18	79	0	79	37	9	35	17	1.83
1422604--1422689	6	14.3	6	77	0	64	37	8	34	19	1.82
1422619--1422693	3	25.0	3	73	0	60	36	6	34	22	1.81
1422607--1422685	36	2.2	36	90	0	122	35	8	35	20	1.84
1422607--1422689	12	6.9	12	83	0	94	36	8	34	20	1.83
1424152--1424815	183	3.6	183	97	0	1249	34	14	16	34	1.89
1427312--1427376	25	2.6	25	77	0	76	35	7	13	43	1.73
1427658--1427706	22	2.2	23	78	10	57	40	12	8	38	1.72
1427724--1427787	23	2.8	23	87	0	92	35	6	20	37	1.78
1427724--1427796	23	3.2	23	82	7	85	34	5	20	39	1.76
1428822--1428846	7	3.6	7	100	0	50	12	44	12	32	1.78
1428909--1429026	57	2.0	58	88	3	175	23	26	11	38	1.88
1429337--1429374	18	2.1	18	90	0	58	26	42	5	26	1.76
1431099--1431136	17	2.3	17	86	4	51	15	21	42	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1436563--1436639	20	3.8	20	71	20	63	59	1	0	38	1.06
1436680--1436749	26	2.7	25	76	13	70	57	0	7	35	1.26
1438031--1438157	47	2.6	49	79	10	127	20	33	28	17	1.95
1442632--1442696	31	2.1	31	82	5	78	21	18	23	36	1.95
1442682--1442750	30	2.3	30	87	2	95	20	23	26	30	1.98
1444064--1444285	111	2.0	111	92	0	372	44	10	8	36	1.69
1444657--1444708	12	4.4	12	75	4	52	15	13	44	26	1.84
1444706--1444766	24	2.6	25	78	17	69	44	0	0	55	0.99
1445109--1445218	50	2.2	50	81	0	121	20	27	34	17	1.95
1448876--1448905	6	5.0	6	91	0	51	46	3	50	0	1.18
1449685--1449722	17	2.1	18	90	9	60	47	2	7	42	1.46
1450888--1450928	8	5.2	8	83	13	50	41	0	58	0	0.98
1470788--1470844	28	2.0	28	90	6	89	26	8	5	59	1.48
1470725--1470906	73	2.5	73	98	0	346	33	7	4	53	1.51
1476668--1476760	29	3.2	28	84	6	114	33	9	17	39	1.82
1478694--1478829	60	2.3	59	77	6	141	30	14	16	38	1.89
1481364--1481451	41	2.1	41	89	0	131	20	13	15	50	1.78
1481612--1481658	24	2.0	23	84	12	60	48	2	0	48	1.13
1481673--1481718	19	2.5	19	89	3	67	47	2	0	50	1.13
1481692--1481778	28	3.0	28	75	9	93	52	1	1	44	1.15
1481676--1481761	23	3.6	23	76	16	75	50	2	1	46	1.21
1481669--1481801	18	7.1	19	69	12	71	49	1	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1481737--1481794	28	2.1	28	80	6	64	51	0	1	46	1.11
1481831--1481901	19	3.6	18	72	20	54	49	1	1	47	1.18
1481896--1481940	23	2.0	23	86	0	63	53	2	2	42	1.25
1482267--1482296	14	2.1	14	93	0	51	43	6	0	50	1.28
1483138--1483180	16	2.6	17	82	10	54	53	2	2	41	1.26
1484667--1484747	34	2.4	34	85	4	101	34	7	2	55	1.41
1485932--1486111	34	5.4	34	96	2	328	28	9	26	36	1.87
1485932--1486111	67	2.7	67	96	1	326	28	9	26	36	1.87
1486568--1486616	25	2.0	25	87	0	71	20	10	40	28	1.85
1500627--1500712	37	2.3	39	80	12	97	45	2	3	48	1.32
1502215--1502307	29	3.2	28	84	6	114	33	9	17	39	1.82
1506936--1507013	41	1.9	41	91	0	129	20	14	16	48	1.80
1507257--1507305	22	2.2	22	88	0	71	51	2	0	46	1.12
1507290--1507343	23	2.3	23	87	6	74	53	1	1	42	1.22
1507310--1507393	23	3.8	23	73	16	63	47	0	2	50	1.14
1507266--1507367	53	1.9	53	82	7	127	51	0	0	46	1.14
1507266--1507356	28	3.4	28	77	13	91	51	1	1	46	1.15
1507416--1507486	19	3.6	18	72	20	54	49	1	1	47	1.18
1507481--1507524	22	2.0	22	86	4	61	54	2	2	40	1.25
1507855--1507884	14	2.1	14	93	0	51	43	6	0	50	1.28
1508497--1508548	22	2.4	22	87	6	70	71	3	0	25	1.03
1508734--1508776	16	2.6	17	82	10	54	53	2	2	41	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1510000--1510031	2	16.0	2	100	0	64	50	0	0	50	1.00
1510259--1510334	35	2.2	36	79	11	86	32	13	3	50	1.60
1510274--1510356	35	2.4	35	84	6	98	36	7	2	54	1.41
1510305--1510355	16	2.9	17	75	24	52	39	3	0	56	1.18
1511548--1511729	34	5.4	34	99	0	346	28	9	26	35	1.88
1512194--1512242	25	2.0	25	87	0	71	20	10	40	28	1.85
1526345--1526430	37	2.3	39	80	12	97	45	2	3	48	1.32
1527943--1528035	29	3.2	28	84	6	114	33	9	17	39	1.82
1532649--1532726	41	1.9	41	91	0	129	20	14	16	48	1.80
1532970--1533018	22	2.2	22	88	0	71	51	2	0	46	1.12
1533003--1533056	23	2.3	23	87	6	74	53	1	1	42	1.22
1533023--1533106	23	3.8	23	73	16	63	47	0	2	50	1.14
1532979--1533080	53	1.9	53	82	7	127	51	0	0	46	1.14
1532979--1533069	28	3.4	28	77	13	91	51	1	1	46	1.15
1533190--1533234	23	2.0	23	86	0	63	53	2	2	42	1.25
1533565--1533594	14	2.1	14	93	0	51	43	6	0	50	1.28
1534205--1534246	21	2.0	21	95	0	75	71	2	0	26	0.98
1534440--1534482	16	2.6	17	82	10	54	53	2	2	41	1.26
1543611--1543648	17	2.2	17	86	9	51	21	0	13	65	1.26
1552381--1552423	15	2.8	15	89	3	59	37	2	4	55	1.33
1554082--1554112	16	1.9	16	93	0	53	35	16	22	25	1.94
1555947--1555994	22	2.1	23	85	11	64	35	8	4	52	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1564731--1564757	13	2.1	13	100	0	54	51	22	11	14	1.73
1565024--1565091	30	2.3	30	92	0	109	33	13	35	17	1.89
1565173--1565253	43	1.9	42	82	9	103	50	0	0	49	1.00
1574632--1574671	21	1.9	21	85	10	55	42	17	10	30	1.82
1575867--1575891	2	12.5	2	100	0	50	52	0	48	0	1.00
1577171--1577212	21	2.0	21	100	0	84	42	9	9	38	1.70
1589755--1589870	60	1.9	59	86	6	162	34	14	15	35	1.88
1591518--1591571	19	2.8	20	91	2	83	42	24	18	14	1.88
1591518--1591625	20	5.4	20	83	3	110	37	22	23	16	1.93
1591690--1591830	6	23.5	6	100	0	282	33	50	16	0	1.45
1592520--1592592	6	12.5	6	98	1	132	0	16	52	31	1.44
1592680--1592977	20	14.6	20	77	7	143	17	24	19	38	1.93
1592682--1592852	40	4.2	40	85	4	216	19	27	18	35	1.95
1592680--1592873	63	3.1	63	85	2	259	19	27	18	35	1.95
1592927--1592977	19	2.6	20	90	3	77	15	17	23	43	1.88
1597758--1597833	36	2.1	36	85	7	100	47	1	2	48	1.24
1597975--1598011	20	1.9	19	89	10	58	18	21	10	48	1.78
1597981--1598018	20	1.9	20	88	0	58	21	23	10	44	1.83
1606925--1606988	19	3.1	20	77	11	58	53	6	1	39	1.36
1607846--1608901	353	3.0	353	99	0	2073	30	16	19	34	1.93
1626235--1626272	17	2.2	17	86	9	51	21	2	0	76	0.91
1626235--1626288	21	2.5	22	82	14	67	20	5	1	72	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1626292--1626347	10	5.5	10	78	17	62	42	1	0	55	1.10
1626297--1626328	2	17.0	2	87	12	50	46	0	0	53	1.00
1637132--1637175	12	3.8	12	90	6	72	81	0	18	0	0.68
1637916--1638920	105	9.7	105	94	2	1676	33	25	18	22	1.96
1637916--1638920	316	3.2	315	93	2	1687	33	25	18	22	1.96
1640326--1640409	42	1.9	45	83	7	111	34	5	0	59	1.22
1640424--1640469	13	3.6	13	82	2	58	8	2	6	82	0.91
1643468--1643680	107	2.0	107	99	0	417	36	14	18	30	1.91
1646332--1646398	34	2.0	34	96	0	125	41	2	8	46	1.50
1647592--1647667	21	3.6	21	83	1	80	35	11	5	47	1.63

Tables:   1   2   3   4   5   6   7   8   9