genome.fa.s7985.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007985.1 Hibiscus syriacus cultivar Beakdansim tig00110430_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2235968

Tables:   1   2   3   4   5   6   7   8   9   

This is table  5  of  9  ( 1062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
845406--845448	6	7.2	6	100	0	86	0	0	34	65	0.93
845540--845577	20	1.9	20	88	0	58	18	2	42	36	1.64
847942--848010	30	2.2	30	85	15	95	34	5	17	42	1.73
847951--848010	30	2.0	30	93	6	104	33	6	16	43	1.74
848207--848290	21	4.0	21	83	6	91	23	20	26	29	1.99
848188--848282	41	2.3	41	81	3	102	22	21	24	32	1.98
849931--850003	24	3.0	24	86	11	103	38	10	17	32	1.85
856621--856700	40	2.0	40	100	0	160	22	15	32	30	1.94
858182--858274	2	52.5	2	71	23	57	58	0	0	41	0.98
858179--858275	18	5.6	17	73	22	78	59	0	0	40	0.97
858179--858275	34	2.8	36	82	17	134	59	0	0	40	0.97
860440--860480	20	2.0	21	85	4	57	70	4	0	24	1.06
860394--860489	36	2.6	36	80	9	106	65	3	2	29	1.19
860616--860645	14	2.1	14	100	0	60	40	0	0	60	0.97
861948--862004	28	2.0	28	93	6	98	29	31	21	17	1.96
861987--862022	18	2.0	18	100	0	72	22	33	22	22	1.97
863411--863517	24	4.5	24	73	0	97	47	15	14	21	1.82
863411--863519	48	2.3	48	77	0	119	47	15	15	21	1.82
864319--864400	2	46.5	2	71	24	51	58	0	0	41	0.98
864332--864394	9	6.6	9	76	18	56	61	0	0	38	0.96
864341--864401	16	4.1	14	80	14	68	60	0	0	39	0.97
864324--864401	23	3.4	22	80	8	84	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
864316--864401	30	2.8	33	79	20	107	60	0	0	39	0.97
866662--866703	20	2.0	21	86	4	59	69	4	0	26	1.08
866617--866703	35	2.4	36	81	9	97	66	3	2	27	1.20
866839--866868	14	2.1	14	100	0	60	40	0	0	60	0.97
876645--876717	36	2.0	37	86	5	105	47	4	1	46	1.30
876640--876720	37	2.2	37	80	8	94	50	3	1	44	1.27
888947--889254	20	15.2	20	77	14	251	41	22	19	16	1.90
888947--889254	40	7.6	39	83	8	284	41	22	19	16	1.90
889362--889418	6	9.5	6	100	0	114	33	50	15	0	1.44
889925--890018	6	15.7	6	100	0	188	0	17	50	32	1.46
890113--890300	20	9.2	20	72	12	134	16	19	20	43	1.88
890122--890223	42	2.4	42	93	0	177	17	20	23	38	1.93
892081--892204	42	2.7	46	79	16	141	41	10	14	33	1.80
893499--893523	2	12.5	2	100	0	50	52	0	48	0	1.00
896791--896831	2	20.5	2	100	0	82	48	0	0	51	1.00
898826--898889	33	1.9	33	87	0	92	42	18	10	28	1.84
899082--899121	21	1.9	21	85	10	55	55	0	0	45	0.99
901513--901541	2	14.5	2	100	0	58	48	0	0	51	1.00
912094--912136	21	2.1	21	87	8	63	48	6	6	37	1.57
912514--912547	13	2.6	13	86	13	52	47	0	0	52	1.00
919963--920079	57	2.1	57	100	0	234	48	9	0	41	1.35
924411--924479	22	3.1	22	97	0	129	21	20	10	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931444--931475	16	2.0	16	100	0	64	37	6	0	56	1.25
936077--936117	19	2.2	19	100	0	82	29	9	31	29	1.89
937171--937298	49	2.6	49	91	1	204	25	21	15	38	1.92
939443--939486	18	2.6	16	85	10	52	43	0	4	52	1.22
956315--956365	27	1.9	26	84	4	66	47	5	9	37	1.61
956926--956985	29	2.0	31	90	6	97	35	6	16	41	1.75
957183--957223	21	2.0	21	95	0	73	24	17	31	26	1.97
957253--957292	20	1.9	21	85	10	55	37	37	10	15	1.80
957507--957576	34	2.1	32	89	5	104	31	15	31	21	1.95
963599--963634	13	2.8	13	91	0	54	41	0	5	52	1.24
979329--979408	32	2.4	35	81	10	96	40	0	1	58	1.06
979378--979441	18	3.6	18	80	17	55	39	4	1	54	1.31
979398--979448	19	2.7	19	77	19	54	37	7	0	54	1.29
987400--987461	31	2.0	31	93	0	106	9	20	12	56	1.65
988284--988315	15	2.0	17	88	11	50	31	15	6	46	1.71
988438--988477	19	2.1	19	85	0	53	77	10	0	12	0.99
988597--988623	13	2.1	13	100	0	54	14	22	22	40	1.90
993507--993592	30	2.8	30	81	8	84	38	5	9	46	1.60
997206--997276	36	2.0	36	100	0	142	64	2	11	21	1.38
997709--997747	12	3.3	12	78	7	53	28	0	0	71	0.86
1001023--1001061	19	2.1	19	95	0	69	28	17	10	43	1.82
1001924--1002001	21	3.4	21	74	19	66	26	2	5	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1002015--1002060	21	2.3	20	82	13	60	58	0	0	41	0.98
1004879--1004920	21	2.0	21	86	4	59	26	2	0	71	0.98
1005593--1005830	37	6.6	35	74	10	160	43	4	10	41	1.60
1005549--1005827	37	7.6	35	70	13	120	43	4	9	41	1.58
1005642--1005849	106	1.9	107	81	11	248	43	5	9	41	1.60
1005818--1005857	21	1.9	21	84	0	53	45	5	10	40	1.60
1007130--1007225	21	4.6	22	66	20	62	19	6	1	72	1.11
1007174--1007224	22	2.4	22	86	3	68	17	3	0	78	0.90
1007174--1007237	22	3.0	21	80	13	67	18	3	1	76	1.00
1010748--1010777	2	15.0	2	100	0	60	50	0	0	50	1.00
1012197--1012263	33	2.0	33	97	0	125	31	29	20	17	1.96
1012898--1012974	23	3.3	23	78	7	84	32	15	23	28	1.95
1013148--1013183	15	2.4	15	95	0	63	36	13	2	47	1.58
1014593--1014646	27	2.0	27	100	0	108	37	18	3	40	1.69
1016892--1016943	23	2.3	23	86	0	68	23	15	21	40	1.91
1018052--1018091	21	2.0	21	95	5	73	35	7	0	57	1.27
1042737--1042835	2	49.5	2	100	0	198	49	0	0	50	1.00
1044431--1044508	40	1.9	41	86	2	113	39	7	24	28	1.83
1055040--1055221	43	4.2	43	74	13	135	27	14	6	51	1.66
1055096--1055260	86	1.9	87	80	6	192	27	18	4	49	1.67
1055116--1055274	43	3.7	44	79	7	137	26	20	6	47	1.74
1055804--1055865	23	2.7	23	92	2	108	41	4	8	45	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1056057--1056095	20	2.0	19	85	5	51	28	0	7	64	1.21
1056150--1056192	21	2.0	21	95	0	77	27	9	30	32	1.88
1058237--1058275	18	2.2	18	90	0	60	17	51	17	12	1.76
1064522--1064571	23	2.1	24	82	10	59	60	8	6	26	1.48
1066207--1066257	25	2.0	25	100	0	102	23	23	23	29	1.99
1071892--1071942	21	2.4	21	100	0	102	29	25	15	29	1.96
1083269--1083485	71	3.1	71	83	7	236	47	6	10	35	1.64
1083837--1083995	76	2.1	76	83	4	205	44	10	11	33	1.76
1083910--1084209	100	3.0	100	87	5	419	43	10	11	35	1.74
1085152--1085308	21	7.8	20	72	9	86	38	24	16	19	1.92
1085211--1085327	20	5.7	20	75	12	78	38	23	17	20	1.93
1085295--1085468	20	8.6	20	83	5	217	34	26	19	19	1.96
1085295--1085468	60	2.9	60	85	0	249	34	26	19	19	1.96
1085968--1086042	21	3.7	20	75	5	78	45	17	24	13	1.84
1086049--1086146	19	5.7	19	70	22	90	10	23	22	43	1.83
1086071--1086160	14	5.7	14	72	23	72	8	24	23	43	1.82
1086054--1086168	33	3.5	33	97	0	221	9	23	20	46	1.80
1087866--1088427	93	6.1	93	99	0	1099	21	12	19	46	1.83
1088475--1088603	19	7.3	19	75	17	125	45	28	17	8	1.77
1088511--1088603	33	2.8	32	91	4	150	46	27	18	7	1.76
1088475--1088603	52	2.5	52	74	14	140	45	28	17	8	1.77
1088599--1088717	19	6.8	18	74	19	110	8	19	25	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1088621--1088677	14	3.7	14	72	20	51	7	19	28	45	1.76
1088604--1088696	33	2.8	33	91	0	159	8	19	24	47	1.77
1088599--1088733	19	7.6	19	73	20	105	9	18	25	45	1.80
1090659--1090694	14	2.6	14	95	0	63	33	0	22	44	1.53
1090801--1090879	19	4.4	19	80	16	105	45	17	22	13	1.84
1090888--1091109	19	12.7	19	76	18	241	14	21	18	45	1.84
1090894--1091081	52	3.6	52	97	0	349	14	21	17	46	1.83
1090912--1091123	33	6.2	33	75	14	216	13	21	18	46	1.83
1093629--1093675	24	2.0	24	87	8	69	38	21	14	25	1.92
1094356--1094605	20	12.5	20	87	1	268	19	18	24	37	1.94

Tables:   1   2   3   4   5   6   7   8   9