genome.fa.s8001.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008001.1 Hibiscus syriacus cultivar Beakdansim tig00110458_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3902382

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  12  of  18  ( 2081 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2308890--2309084	68	2.9	68	88	0	291	27	24	14	33	1.95
2309304--2309454	55	2.7	56	82	7	166	31	21	10	37	1.87
2309818--2310004	95	2.0	95	84	4	243	22	21	18	37	1.94
2317622--2318051	191	2.2	192	81	4	476	39	13	10	37	1.79
2323731--2323777	19	2.5	19	82	3	60	14	40	23	21	1.90
2337064--2337110	15	3.1	15	100	0	94	19	42	19	19	1.89
2337570--2337622	21	2.5	21	84	0	70	20	26	18	33	1.96
2337612--2337685	20	3.7	20	74	3	85	36	18	21	22	1.95
2337672--2337723	20	2.6	20	90	0	86	32	26	17	23	1.96
2337902--2337963	18	3.0	22	72	18	69	25	38	16	19	1.92
2338351--2338397	20	2.3	20	89	7	69	12	12	23	51	1.74
2338362--2338399	20	1.9	20	100	0	76	10	13	21	55	1.67
2338362--2338407	20	2.3	20	92	0	74	15	13	17	54	1.71
2340277--2340360	20	4.5	20	77	17	99	41	22	19	16	1.90
2340300--2340381	34	2.4	34	93	0	137	43	21	20	13	1.86
2340333--2340398	19	3.7	18	73	21	59	42	19	21	16	1.89
2340411--2340453	20	2.2	20	86	0	59	23	18	23	34	1.96
2340375--2340544	87	2.0	87	87	0	250	18	18	21	40	1.91
2340427--2340520	33	2.8	34	81	3	127	13	19	22	44	1.85
2340492--2340540	20	2.5	20	100	0	98	14	20	26	38	1.91
2340492--2340550	20	3.0	20	89	0	64	15	18	23	42	1.88
2341026--2341082	21	2.7	21	100	0	114	21	35	21	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2341025--2341152	21	6.1	21	77	1	107	21	38	18	21	1.94
2342509--2342544	14	2.6	14	90	0	54	30	0	22	47	1.52
2342646--2342774	33	3.8	33	90	2	186	44	19	23	13	1.85
2342783--2342870	19	4.8	19	80	16	114	14	21	18	45	1.85
2342783--2342892	52	2.1	53	89	1	168	15	22	17	44	1.86
2342880--2342929	20	2.5	20	86	0	73	22	22	22	34	1.97
2342877--2342943	20	3.4	19	78	15	66	20	20	22	35	1.96
2345374--2345427	24	2.2	24	90	0	81	40	20	16	22	1.91
2346288--2346394	20	5.3	20	81	8	119	21	16	20	41	1.91
2353888--2353997	15	7.7	15	69	24	62	30	25	6	37	1.81
2353871--2354001	54	2.5	53	96	2	237	31	25	5	37	1.79
2363999--2364047	24	2.0	24	84	0	62	48	16	12	22	1.79
2364047--2364123	24	3.2	24	83	10	104	41	19	14	24	1.89
2364047--2364141	24	4.0	24	81	8	86	43	18	13	24	1.87
2364028--2364141	48	2.3	48	77	11	115	43	18	14	23	1.86
2365315--2365349	18	1.9	18	88	0	52	28	17	0	54	1.43
2373873--2373949	32	2.5	31	76	4	82	33	29	20	15	1.94
2379623--2379648	4	6.5	4	100	0	52	23	0	0	76	0.78
2380876--2381067	89	2.1	92	88	6	284	32	25	15	27	1.96
2384784--2384829	18	2.5	19	74	25	53	41	2	0	56	1.11
2384801--2384849	25	2.0	25	84	7	66	42	2	0	55	1.11
2384809--2384857	25	1.9	25	83	4	62	46	0	2	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2385684--2385922	120	1.9	122	88	5	356	41	15	14	28	1.85
2388362--2388400	17	2.4	17	95	4	71	43	0	5	51	1.24
2391953--2391981	2	14.5	2	100	0	58	48	0	0	51	1.00
2392222--2392269	25	2.0	25	83	4	62	31	0	22	45	1.53
2395417--2395449	15	2.1	17	88	11	52	42	0	12	45	1.41
2395966--2396222	47	5.5	46	91	4	372	43	5	11	39	1.63
2405243--2405288	15	3.3	15	76	14	53	56	0	2	41	1.11
2406159--2406200	15	2.9	14	89	7	57	0	21	2	76	0.90
2406159--2406200	20	2.1	20	86	8	59	0	21	2	76	0.90
2406675--2406754	3	27.0	3	84	2	108	60	0	0	40	0.97
2407005--2407094	36	2.5	36	90	3	137	20	20	10	50	1.76
2407040--2407804	113	6.8	112	88	4	981	29	18	14	36	1.91
2408534--2408929	83	4.7	83	97	0	675	36	23	14	26	1.93
2420745--2420811	21	3.2	21	73	21	52	61	1	1	35	1.15
2421433--2421478	15	3.3	15	76	14	53	56	0	2	41	1.11
2422351--2422392	15	2.9	14	89	7	57	0	21	2	76	0.90
2422351--2422392	20	2.1	20	86	8	59	0	21	2	76	0.90
2422439--2422482	20	2.2	20	87	0	61	0	31	11	56	1.35
2422885--2422965	3	26.7	3	85	7	110	61	0	0	38	0.96
2423976--2424073	41	2.4	41	96	0	178	31	12	19	36	1.89
2426274--2426322	18	2.7	18	96	0	89	26	22	26	24	2.00
2435321--2435356	18	2.0	18	88	0	54	8	38	22	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2440205--2440257	22	2.3	23	87	6	72	50	18	11	18	1.76
2441039--2441231	31	6.2	31	88	5	266	32	20	18	28	1.96
2442184--2442241	23	2.5	23	91	0	98	29	25	22	22	1.99
2447454--2447520	31	2.4	26	78	21	89	31	22	29	16	1.96
2451944--2452018	38	2.0	37	84	5	98	48	4	1	46	1.29
2458429--2458467	20	2.0	20	85	10	53	43	25	10	20	1.83
2465814--2465919	51	2.1	51	92	0	176	28	9	19	42	1.82
2466025--2466062	2	19.0	2	100	0	76	50	0	0	50	1.00
2467305--2467427	42	2.9	43	95	2	223	51	14	14	19	1.77
2469211--2469249	18	2.2	18	90	0	60	41	0	0	58	0.98
2469554--2469584	10	3.0	10	95	4	53	51	0	0	48	1.00
2470707--2470743	18	2.1	18	100	0	74	43	18	0	37	1.51
2475371--2475629	128	2.0	128	95	0	464	44	11	6	36	1.68
2476192--2476242	18	2.8	18	77	16	52	37	13	5	43	1.69
2476457--2476535	31	2.5	31	97	0	149	43	21	17	17	1.89
2477771--2477801	3	10.3	3	92	0	53	61	0	35	3	1.12
2521887--2522064	84	2.1	85	95	1	322	32	28	10	28	1.90
2522172--2522217	17	2.6	18	80	13	60	50	0	34	15	1.44
2522627--2522667	14	2.8	14	85	10	55	48	0	0	51	1.00
2529447--2529527	16	4.3	20	74	16	66	34	14	2	48	1.58
2531343--2531387	20	2.3	20	88	3	65	37	24	0	37	1.56
2535506--2535586	26	3.2	25	68	16	67	48	8	2	40	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2535659--2535708	20	2.5	20	72	15	50	50	0	2	48	1.12
2543418--2543492	31	2.4	31	93	0	123	56	16	10	17	1.67
2546481--2546538	19	3.1	19	85	2	73	22	0	0	77	0.77
2551343--2551413	34	2.1	33	84	10	90	64	12	2	19	1.39
2551453--2551498	12	3.8	12	80	5	56	63	13	6	17	1.50
2553708--2553741	9	3.9	9	84	7	52	64	2	0	32	1.08
2553788--2553827	10	4.0	10	86	0	53	40	0	32	27	1.57
2558132--2558177	20	2.3	20	84	0	56	28	26	15	30	1.96
2564522--2564615	29	3.3	28	86	4	125	38	11	22	27	1.89
2565462--2565502	20	2.0	20	90	0	64	53	17	12	17	1.72
2567575--2567631	28	2.0	28	90	6	89	42	14	3	40	1.62
2570450--2570513	32	2.0	32	87	6	94	31	18	18	31	1.95
2573988--2574016	6	5.0	6	91	8	51	17	31	34	17	1.93
2574113--2574209	40	2.4	40	94	3	169	21	15	16	46	1.84
2575509--2575540	8	3.8	9	92	8	50	62	0	0	37	0.95
2577005--2577075	29	2.4	29	78	0	79	45	16	16	21	1.86
2577633--2577674	13	3.2	13	89	3	57	38	16	21	23	1.93
2593272--2593823	277	2.0	278	96	2	1031	31	17	23	26	1.97
2597619--2597715	30	3.1	30	75	18	83	46	3	2	48	1.29
2597632--2597686	19	2.9	19	84	10	69	49	1	1	47	1.23
2597640--2597720	22	3.9	21	70	10	60	49	2	1	46	1.23
2597729--2597787	25	2.4	25	78	15	70	52	1	0	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2598015--2598049	18	1.9	18	88	0	52	51	11	14	22	1.74
2598063--2598090	14	2.0	14	100	0	56	42	7	7	42	1.59
2598135--2598164	15	2.0	15	100	0	60	46	26	0	26	1.53
2609538--2609568	16	1.9	16	93	0	53	29	29	6	35	1.82
2609662--2609713	22	2.3	22	80	9	61	40	3	0	55	1.18
2610330--2610371	2	21.0	2	100	0	84	50	0	0	50	1.00
2621157--2621220	2	32.0	2	100	0	128	50	0	0	50	1.00
2621273--2621571	85	3.5	84	94	1	492	31	18	21	29	1.97
2621550--2621581	13	2.5	13	94	0	55	28	25	21	25	1.99
2630299--2630357	22	2.7	22	91	0	91	37	13	18	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18