genome.fa.s8001.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008001.1 Hibiscus syriacus cultivar Beakdansim tig00110458_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3902382

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2081 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3868263--3868301	21	1.9	19	85	10	51	71	0	10	17	1.12
3868338--3868367	2	15.0	2	92	0	51	53	0	0	46	1.00
3868870--3868912	18	2.5	17	85	7	61	67	2	4	25	1.22
3868800--3868927	65	2.0	62	82	10	152	60	3	3	32	1.28
3869269--3869370	37	2.8	37	84	3	125	30	15	11	42	1.83
3870135--3870369	98	2.3	103	81	10	273	18	22	26	32	1.97
3870538--3870613	36	2.1	36	90	0	116	40	15	21	22	1.90
3870629--3870808	39	4.9	39	65	19	109	36	12	22	28	1.90
3870513--3870831	105	3.1	105	92	4	515	36	11	21	30	1.89
3870919--3871035	36	3.1	36	72	9	101	37	15	19	27	1.92
3870902--3871060	72	2.2	75	84	7	202	40	14	18	26	1.89
3872141--3872548	192	2.1	191	91	1	647	31	18	18	30	1.95
3880401--3881996	456	3.5	453	81	3	1619	22	26	22	28	1.99
3880414--3881996	228	6.9	227	83	3	1432	22	26	22	28	1.99
3882978--3883024	16	2.9	16	81	6	60	48	0	0	51	1.00
3884998--3885074	31	2.5	31	80	2	91	27	31	27	14	1.95
3884951--3885074	63	2.0	63	82	6	153	25	29	28	16	1.97
3885942--3885972	7	4.4	7	100	0	62	25	29	29	16	1.96
3885962--3886004	22	2.0	22	100	0	86	9	23	48	18	1.76
3886003--3886116	19	5.9	19	80	11	106	31	29	22	15	1.95
3886045--3886121	29	2.6	30	83	10	104	28	28	24	18	1.98
3886001--3886118	9	12.3	9	73	12	83	30	28	24	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3886081--3886119	21	1.9	21	94	5	71	33	25	25	15	1.95
3892304--3892427	63	2.0	63	82	6	153	25	28	28	17	1.98
3892304--3892427	31	3.9	32	74	4	101	25	28	28	17	1.98
3893313--3893370	5	10.8	5	78	14	62	6	22	51	18	1.70
3893306--3893370	22	3.0	22	100	0	130	9	23	49	18	1.76
3893367--3893416	9	5.3	9	79	9	55	28	30	28	14	1.95
3893367--3893416	19	2.7	18	81	9	64	28	30	28	14	1.95
3894596--3894638	21	2.0	21	100	0	86	34	13	0	51	1.42
3895608--3895689	15	5.5	15	85	2	112	39	7	18	35	1.78
3895608--3895689	30	2.8	30	90	1	130	39	7	18	35	1.78
3895604--3895689	45	1.9	44	92	2	145	41	6	17	33	1.76
3895672--3895740	20	3.5	20	92	4	122	39	10	14	36	1.80
3895889--3895948	26	2.3	24	81	13	66	50	1	1	46	1.21
3895888--3895964	29	2.8	26	75	17	84	54	1	1	42	1.16
3895905--3896058	29	5.5	28	72	19	101	50	1	0	48	1.14
3895997--3896071	30	2.5	30	85	8	91	52	0	0	48	1.00
3896004--3896057	11	5.2	11	73	13	51	53	0	0	46	1.00
3896244--3896357	41	2.8	41	94	0	192	47	19	15	17	1.83
3897570--3897599	13	2.2	14	94	5	53	73	0	26	0	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!