genome.fa.s8007.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008007.1 Hibiscus syriacus cultivar Beakdansim tig00110469_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1953294

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1251 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585885--586038	45	3.4	45	86	2	211	38	6	22	31	1.80
585907--586038	46	2.9	45	87	2	201	38	6	22	31	1.81
588283--588361	29	2.7	29	90	0	131	13	40	24	21	1.90
588611--588671	23	2.7	23	97	0	113	19	22	19	37	1.94
588611--588669	11	5.2	11	80	8	73	18	23	18	38	1.93
588788--588849	23	2.7	23	87	2	88	58	1	37	3	1.24
588902--588999	39	2.6	36	83	13	124	37	3	15	43	1.62
588926--589010	39	2.2	39	93	0	143	38	4	16	40	1.69
589088--589140	28	1.9	27	88	3	79	32	1	16	49	1.57
589087--589151	27	2.3	29	82	10	82	36	1	15	46	1.55
589361--589400	21	1.9	21	94	0	71	30	0	12	57	1.36
589579--589698	30	4.3	30	76	19	127	42	0	12	44	1.48
589612--589692	22	3.3	22	73	23	81	44	0	13	41	1.44
589619--589669	15	3.3	16	72	10	61	45	0	13	41	1.44
589645--589683	11	3.5	11	80	13	53	48	0	12	38	1.42
593114--593151	17	2.2	17	86	9	51	47	13	0	39	1.42
593567--593669	50	2.1	50	82	10	135	48	7	0	42	1.38
593631--593693	28	2.2	30	94	5	112	57	12	0	30	1.36
593635--593700	28	2.4	28	87	10	107	56	12	0	31	1.36
593670--593718	21	2.3	21	85	3	71	53	16	0	30	1.43
594183--594265	29	2.9	29	87	0	103	15	25	38	20	1.92
597679--597725	25	1.9	25	86	4	69	51	12	2	34	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598205--598240	19	1.9	19	88	5	56	33	0	5	61	1.19
598693--598779	23	3.8	23	86	3	113	44	14	25	14	1.84
598800--598828	12	2.3	13	94	5	51	82	0	10	6	0.83
606525--606611	2	43.5	2	100	0	174	0	50	0	49	1.00
609028--609064	20	1.9	19	89	10	58	45	10	24	18	1.81
608435--609593	638	1.8	643	93	2	2008	40	9	13	35	1.78
609910--609958	20	2.2	24	86	13	70	32	2	0	65	1.04
616037--616077	22	1.9	22	90	5	66	31	7	7	53	1.56
618566--618618	25	2.2	25	86	10	74	64	7	5	22	1.41
623318--623372	13	4.8	11	74	24	51	16	5	1	76	1.06
627384--627436	20	2.7	19	85	8	70	52	1	0	45	1.11
627384--627436	7	7.9	7	80	16	67	52	1	0	45	1.11
627384--627436	13	3.9	14	81	13	67	52	1	0	45	1.11
627487--627519	13	2.5	13	90	9	50	69	0	3	27	1.03
627373--627506	70	1.9	70	83	8	175	49	1	4	44	1.31
638669--638942	43	6.4	43	84	3	203	28	21	24	25	1.99
638669--638894	86	2.6	86	87	1	310	27	22	23	26	1.99
638737--638943	86	2.4	86	84	3	265	28	23	23	25	2.00
638710--638942	129	1.8	129	83	3	317	28	21	23	26	1.99
639090--639148	21	2.8	21	84	0	73	55	20	5	18	1.61
639175--639373	42	4.8	41	81	3	247	33	20	19	27	1.96
639175--639373	82	2.4	83	90	1	328	33	20	19	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643029--643094	27	2.3	29	85	10	93	50	1	0	48	1.10
643032--643101	30	2.2	33	80	12	85	50	1	0	48	1.09
643052--643115	11	6.2	10	72	16	51	46	3	0	50	1.17
643037--643150	42	2.6	45	76	17	123	51	2	0	45	1.15
645252--645309	29	2.0	29	96	0	107	53	24	5	17	1.64
647846--647885	2	20.0	2	100	0	80	50	0	0	50	1.00
649439--649469	11	2.8	11	100	0	62	19	6	9	64	1.45
650311--650389	29	2.7	29	98	0	149	25	27	27	18	1.98
650390--650436	21	2.2	21	100	0	94	29	25	29	14	1.95
650423--650462	9	4.2	9	81	12	53	37	32	17	12	1.87
650424--650462	20	2.0	20	94	0	69	38	30	17	12	1.88
650465--650521	28	2.0	28	93	0	96	24	21	36	17	1.94
650558--650615	29	2.0	29	100	0	116	13	31	31	24	1.94
650926--650976	26	2.0	26	88	3	77	45	11	35	7	1.70
651133--651221	41	2.2	41	78	8	92	42	1	10	46	1.45
651202--651292	45	2.0	47	87	8	134	41	0	10	47	1.39
651161--651292	45	3.0	45	80	10	130	40	0	11	47	1.39
651334--651410	34	2.3	33	81	14	88	40	0	12	46	1.42
653647--653679	17	1.9	17	93	0	57	45	12	6	36	1.66
653664--653732	22	3.0	22	73	19	77	47	7	4	40	1.51
653872--653913	20	2.1	20	86	0	57	42	4	4	47	1.45
653889--653913	13	1.9	13	100	0	50	40	8	4	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653913--653948	11	3.4	11	88	3	56	58	5	0	36	1.22
653887--654484	12	45.1	13	70	19	252	44	9	2	43	1.50
653945--654484	26	21.7	26	74	12	427	43	10	2	44	1.50
653902--654542	124	5.2	124	96	0	1155	44	9	2	43	1.49
654144--654487	150	2.3	145	84	10	412	43	10	2	44	1.52
657369--657427	26	2.3	24	78	16	64	40	3	8	47	1.51
658234--658296	28	2.2	30	91	5	103	57	11	0	31	1.34
658238--658303	28	2.4	28	85	10	98	56	10	0	33	1.34
658273--658321	21	2.3	21	85	3	71	53	16	0	30	1.43
658845--658917	20	3.3	20	67	26	58	24	47	8	19	1.76
658825--658917	46	2.0	46	97	0	177	23	47	9	19	1.79
658977--659038	29	2.1	29	96	0	115	17	33	32	16	1.92
659465--659528	3	21.0	3	75	15	51	64	0	34	1	1.03
659485--659536	16	2.9	18	75	18	56	55	0	42	1	1.10
665509--665554	3	16.0	3	91	8	78	69	0	0	30	0.89
667070--667111	12	3.5	12	100	0	84	23	33	23	19	1.97
667070--667119	24	2.1	23	92	3	82	24	32	24	20	1.98
667235--667307	24	3.0	24	90	4	76	9	15	26	49	1.74
667245--667300	14	4.3	14	82	17	84	7	14	26	51	1.67
667246--667307	24	2.6	24	97	0	115	8	12	25	53	1.66
668390--668456	16	4.3	16	84	3	84	10	11	20	56	1.64
668388--668448	32	1.9	32	89	0	95	8	14	24	52	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668517--668547	16	1.9	16	100	0	62	6	12	22	58	1.58
673590--673675	43	2.0	43	88	4	129	24	2	19	53	1.57
673974--674007	2	16.0	2	88	11	50	47	2	2	47	1.32
678056--678080	2	12.5	2	100	0	50	52	0	0	48	1.00
678588--678636	23	2.1	23	88	0	71	40	8	18	32	1.80
682375--682433	20	3.0	20	87	4	77	22	0	28	49	1.50
682375--682452	39	2.0	39	82	7	97	20	0	29	50	1.49
682375--682452	19	4.1	19	82	11	88	20	0	29	50	1.49
685604--685650	24	2.0	24	83	8	60	36	0	27	36	1.57
685755--686294	170	3.2	169	83	2	642	31	16	20	32	1.94
688282--688335	21	2.6	21	87	0	81	20	14	35	29	1.93
688663--688694	2	16.0	2	100	0	64	50	0	0	50	1.00
689812--689857	16	2.8	17	83	12	60	65	2	2	30	1.16
690245--690300	29	1.9	29	85	0	76	32	5	26	35	1.79
696943--696985	19	2.4	19	88	7	63	20	30	11	37	1.89
696953--696995	9	4.7	9	83	16	61	18	27	11	41	1.85
700084--700182	36	2.8	36	95	0	180	25	18	15	41	1.89
702372--702416	21	2.1	21	87	0	63	31	28	24	15	1.96
703212--703336	31	4.0	31	92	2	198	20	20	23	36	1.95
706488--706532	21	2.1	21	87	0	63	31	28	24	15	1.96
707334--707458	31	4.0	31	92	2	198	20	20	23	36	1.95
709833--709890	25	2.3	25	93	0	98	39	6	24	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714230--714400	36	4.8	36	91	0	270	28	16	12	42	1.85
715728--715759	2	16.5	2	93	6	57	53	0	0	46	1.00
715746--716179	36	11.3	38	78	12	403	43	3	6	46	1.47
715789--716149	74	4.8	73	88	6	471	43	3	6	46	1.46
716192--716247	4	14.8	4	89	10	75	25	0	0	75	0.81
721699--721844	64	2.2	66	85	4	190	30	24	17	27	1.97
721742--721864	64	1.9	62	82	9	149	28	23	17	30	1.97
729265--729308	21	2.1	21	82	0	52	9	43	15	31	1.79
730032--730059	12	2.3	12	100	0	56	39	7	7	46	1.59
732736--733047	85	3.7	84	82	5	398	31	25	19	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11