genome.fa.s8007.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008007.1 Hibiscus syriacus cultivar Beakdansim tig00110469_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1953294

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1251 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
875055--875082	2	14.0	2	100	0	56	50	0	0	50	1.00
910943--911013	31	2.3	31	87	4	99	26	23	14	35	1.93
910959--911020	31	2.0	31	96	0	115	22	25	17	33	1.96
911419--911476	3	20.0	3	79	13	68	32	0	0	67	0.91
911464--911504	21	2.0	20	86	9	57	43	0	0	56	0.99
911463--911505	22	2.0	22	90	9	70	44	0	0	55	0.99
911547--911590	15	3.4	13	82	17	56	52	0	0	47	1.00
911553--911589	15	2.5	15	91	4	58	51	0	0	48	1.00
912794--912870	34	2.3	34	100	0	154	38	3	22	35	1.72
913467--913525	31	1.9	31	85	0	82	25	25	11	37	1.90
919448--919515	2	34.0	2	100	0	136	50	0	0	50	1.00
921452--921535	5	17.6	5	75	16	56	75	3	1	20	1.03
921447--921535	4	21.2	4	73	22	60	75	3	1	20	1.01
922262--922362	34	2.9	35	85	11	143	27	16	12	42	1.85
922911--923570	105	6.3	105	90	3	929	22	18	26	33	1.96
923966--924023	29	2.0	27	81	15	64	25	18	12	43	1.85
924161--924330	68	2.5	68	83	5	213	35	10	22	32	1.87
924174--924566	65	5.8	66	73	13	235	38	11	20	28	1.88
924306--924586	36	8.0	35	78	12	272	40	13	19	25	1.89
924255--924560	138	2.2	136	86	2	407	39	13	19	27	1.89
924448--924620	36	4.8	36	85	4	172	39	16	20	23	1.91
925065--925100	18	2.0	18	88	0	54	41	30	8	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
925516--925571	22	2.5	22	97	0	103	26	12	25	35	1.91
926203--926241	19	2.0	20	90	5	62	2	12	10	74	1.17
926239--926289	18	2.7	19	78	9	59	1	11	3	82	0.89
926239--926289	12	4.1	12	76	16	50	1	11	3	82	0.89
929298--929371	5	15.4	5	79	10	75	75	4	1	18	1.03
929293--929387	4	22.2	4	73	23	54	75	3	1	20	0.99
930113--930211	34	2.8	35	86	10	139	29	15	13	42	1.84
930931--930976	3	15.3	3	100	0	92	67	0	0	32	0.91
933438--933480	19	2.4	17	81	14	50	58	0	0	41	0.98
938215--938243	2	14.5	2	100	0	58	0	48	0	51	1.00
942522--942607	6	14.0	6	75	14	52	73	0	6	19	1.06
942513--942589	31	2.5	30	79	14	86	72	0	11	15	1.11
942585--942619	3	11.7	3	88	11	54	68	0	2	28	1.04
942675--942709	18	2.0	17	88	5	52	71	2	2	22	1.13
945416--945461	23	2.0	23	91	0	74	21	10	8	58	1.58
945423--945466	23	2.0	23	82	8	56	27	11	6	54	1.61
948602--948693	41	2.2	41	88	0	130	40	22	15	21	1.91
948603--948699	20	4.8	20	71	12	72	38	22	16	22	1.93
948848--948891	22	2.0	22	95	0	79	20	45	15	18	1.85
949154--949212	20	3.0	20	87	0	73	16	18	22	42	1.89
949349--949403	25	2.2	24	78	15	58	20	9	18	52	1.71
950534--950578	18	2.5	18	88	0	72	26	44	15	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951056--951106	20	2.5	20	83	0	66	41	21	21	15	1.90
951093--951217	32	3.7	33	87	6	153	48	19	18	14	1.82
951123--951217	18	5.4	19	72	16	87	48	17	18	14	1.81
951163--951225	19	3.4	19	82	4	83	47	15	20	15	1.82
951237--951327	14	5.9	14	73	20	74	10	16	23	49	1.77
951232--951343	33	3.4	33	95	1	190	11	16	22	49	1.78
951329--951383	20	2.8	19	81	8	65	18	21	21	38	1.94
953256--953291	14	2.6	14	90	0	54	30	0	22	47	1.52
953408--953475	19	3.8	19	85	14	101	47	17	22	13	1.82
953502--953589	20	4.4	20	77	5	106	17	21	22	38	1.93
953879--953927	20	2.4	21	86	3	64	20	22	16	40	1.91
953916--953950	16	2.2	16	100	0	70	25	11	17	45	1.81
954143--954176	12	2.9	12	86	4	52	17	41	5	35	1.74
954731--954784	24	2.2	24	90	0	81	22	16	20	40	1.91
954959--954995	12	3.1	12	100	0	74	72	0	27	0	0.84
957287--957380	33	2.8	33	95	0	161	42	19	24	13	1.87
957287--957384	19	5.7	19	66	22	72	42	19	24	13	1.87
957395--957451	14	3.7	14	70	20	51	8	22	22	45	1.80
957380--957469	33	2.7	33	91	0	144	13	21	21	44	1.85
957409--957469	19	3.5	19	70	21	60	11	21	21	45	1.82
958958--959108	42	3.6	41	77	8	160	21	19	37	22	1.95
958988--959157	84	2.1	78	93	6	286	24	16	38	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958958--959108	21	7.2	21	62	10	58	21	19	37	22	1.95
959376--959560	91	2.0	90	89	6	282	46	18	12	22	1.83
959692--959731	21	1.9	21	85	10	55	35	32	17	15	1.91
961247--961284	20	1.9	20	88	0	58	42	21	23	13	1.88
961276--961362	14	5.5	14	68	24	57	43	21	22	11	1.85
961255--961378	33	3.8	33	88	4	155	44	20	22	12	1.85
961947--961999	20	2.7	20	88	5	72	26	18	28	26	1.98
962008--962061	20	2.7	20	97	0	99	25	18	24	31	1.97
961948--962082	61	2.2	61	80	2	146	22	19	24	33	1.97
963629--963665	2	18.5	2	100	0	74	48	0	0	51	1.00
964273--964310	17	2.3	17	86	4	51	44	2	2	50	1.30
973505--973708	102	2.0	102	97	0	381	41	23	12	23	1.88
978098--978214	60	2.0	60	82	1	146	33	16	16	34	1.91
978253--978300	24	2.0	24	95	0	87	41	10	8	39	1.69
979180--979226	3	15.3	3	86	4	67	38	2	0	59	1.09
980754--980786	15	2.3	15	89	5	50	42	3	0	54	1.15
989654--989892	75	3.2	74	86	4	313	32	16	20	30	1.95
990729--990890	54	3.0	54	89	3	245	37	14	20	26	1.92
993769--993801	15	2.3	15	89	5	50	42	3	0	54	1.15
993896--993928	17	1.9	17	88	11	50	42	3	0	54	1.15
1009080--1009130	25	2.0	26	96	3	95	25	23	19	31	1.98
1009177--1009228	19	2.7	19	100	0	104	30	17	30	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1009567--1009609	20	2.2	20	91	0	68	6	58	27	6	1.50
1011259--1011315	27	2.1	27	90	0	87	28	10	45	15	1.79
1016774--1016801	3	9.3	3	100	0	56	0	0	32	67	0.91
1017123--1017192	18	3.9	18	77	7	61	20	18	32	28	1.96
1017123--1017192	36	1.9	36	82	0	86	20	18	32	28	1.96
1023773--1023945	90	1.9	88	95	2	310	37	10	6	45	1.65
1033491--1033667	90	2.0	89	94	1	309	37	10	6	45	1.66
1034563--1034590	2	14.0	2	100	0	56	50	0	0	50	1.00
1048453--1048511	28	2.1	28	90	6	93	30	0	25	44	1.55
1048479--1048562	21	4.0	21	75	17	75	23	0	30	45	1.53
1048457--1048525	28	2.5	28	80	4	77	28	0	28	42	1.56
1048453--1048560	35	3.1	35	76	10	105	25	0	29	45	1.54
1048832--1048868	17	2.2	17	90	0	56	24	13	29	32	1.93
1048853--1048904	11	4.6	11	80	4	59	28	21	23	26	1.99
1048862--1048905	23	1.9	23	90	0	70	31	22	20	25	1.98
1049184--1049259	30	2.6	30	85	2	100	55	5	10	28	1.56
1050765--1051107	128	2.6	127	77	7	348	29	17	25	26	1.98
1052193--1052278	41	2.1	41	86	4	120	2	12	9	75	1.13
1052205--1052268	12	4.9	13	74	14	53	1	12	6	79	0.98
1054535--1054828	63	4.8	60	82	6	306	42	15	16	25	1.88
1054514--1054827	126	2.6	120	82	3	367	42	15	17	25	1.88
1054595--1054827	63	3.7	63	87	0	313	42	15	15	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058602--1058663	32	1.9	32	90	6	99	59	9	12	17	1.59
1059693--1059735	16	2.8	16	86	10	54	55	6	4	32	1.47
1060050--1060087	20	1.9	19	89	5	58	76	5	2	15	1.08
1060808--1060883	30	2.6	30	85	2	100	55	5	11	27	1.57
1063874--1063938	29	2.2	29	89	8	96	35	7	16	40	1.78
1071046--1071088	17	2.5	17	92	0	68	20	46	18	13	1.83
1071149--1071245	29	3.3	29	83	9	92	34	6	18	41	1.76
1071179--1071246	29	2.3	29	89	2	100	30	7	20	41	1.80
1073337--1073809	258	1.8	258	84	0	640	28	19	18	33	1.96
1073738--1073895	85	1.9	85	87	0	235	27	15	20	37	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11