Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008007.1 Hibiscus syriacus cultivar Beakdansim tig00110469_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1953294

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1251 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1850685--1850724
14
2.4
18
69
30
52
22
35
0
42
1.54
1850691--1850722
14
2.3
14
100
0
64
21
31
0
46
1.52
1850752--1850782
2
15.5
2
100
0
62
51
0
0
48
1.00
1850510--1850938
225
1.9
225
83
8
559
34
14
8
42
1.76
1851420--1851459
21
2.0
20
85
5
53
32
15
0
52
1.43
1851708--1851752
23
2.0
23
86
8
65
51
26
4
17
1.65
1853954--1853980
2
13.5
2
100
0
54
48
0
0
51
1.00
1858475--1858944
241
1.9
242
96
0
870
35
13
15
35
1.88
1864012--1864057
17
2.6
17
83
12
58
30
0
0
69
0.89
1883770--1883815
21
2.1
22
88
4
67
47
6
10
34
1.64
1884692--1884725
12
2.8
12
100
0
68
50
0
26
23
1.50
1885580--1885628
23
2.1
24
84
3
64
24
16
26
32
1.96
1887234--1887271
19
2.1
19
85
5
51
44
13
2
39
1.57
1895843--1895886
13
3.4
13
80
0
52
68
13
2
15
1.31
1896302--1896365
33
1.9
33
84
6
85
28
18
40
12
1.87
1897010--1897035
3
8.7
3
100
0
52
69
30
0
0
0.89
1900606--1900639
9
3.9
9
84
7
52
61
2
0
35
1.11
1900602--1900640
17
2.4
17
95
4
71
61
5
0
33
1.18
1905073--1905100
2
14.0
2
100
0
56
50
0
0
50
1.00
1906727--1906760
18
1.9
18
88
5
52
70
0
2
26
1.01
1907276--1907331
23
2.4
23
79
8
60
62
1
19
16
1.41
1910450--1910503
2
27.0
2
100
0
108
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1910814--1910861
22
2.3
20
89
7
69
16
6
0
77
0.97
1910814--1910861
10
4.6
10
80
10
60
16
6
0
77
0.97
1917335--1917378
18
2.4
19
81
11
56
20
9
0
70
1.14
1921739--1921768
15
2.0
15
100
0
60
26
33
20
20
1.97
1925119--1925177
27
2.2
27
87
6
84
32
3
10
54
1.51
1926025--1926083
29
2.1
29
87
3
84
57
6
3
32
1.41
1928204--1928231
4
7.0
4
100
0
56
75
0
0
25
0.81
1928373--1928398
2
13.0
2
100
0
52
50
0
0
50
1.00
1929611--1929640
5
6.0
5
92
0
51
76
0
3
20
0.92
1929791--1930003
74
2.9
74
72
22
198
43
8
3
44
1.52
1929691--1930027
38
9.6
34
72
19
159
43
7
3
45
1.50
1930589--1931875
84
15.5
83
80
5
1311
23
19
25
30
1.98
1930589--1931875
248
5.2
247
81
5
1322
23
19
25
30
1.98
1930589--1931835
331
3.8
328
85
4
1499
23
19
26
30
1.98
1936978--1937016
6
6.5
6
81
0
51
76
0
5
17
0.96
1937128--1937152
2
12.5
2
100
0
50
52
48
0
0
1.00
1937152--1937197
2
23.0
2
100
0
92
50
0
0
50
1.00
1938450--1938525
35
2.3
32
82
11
82
51
5
3
39
1.43
1938560--1938681
35
3.2
37
75
15
99
43
8
4
44
1.53
1938398--1938750
146
2.5
140
80
13
364
45
8
3
43
1.50
1938407--1938727
37
8.9
35
70
21
154
44
8
3
43
1.51
1941260--1941314
18
3.2
16
76
16
56
61
7
7
23
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1942985--1943293
136
2.3
136
91
0
501
26
21
17
34
1.96
1944170--1944253
19
4.4
20
73
23
74
8
13
0
78
0.96
1944176--1944253
21
4.1
20
74
22
78
8
11
0
79
0.93
1944168--1944253
28
3.1
27
80
15
95
8
12
0
79
0.94
1944182--1944238
11
5.5
11
77
12
66
8
10
0
80
0.90
1944182--1944244
10
6.3
10
77
18
69
7
11
0
80
0.89
1944194--1944265
16
4.1
16
80
18
74
9
9
0
80
0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!